Vocar.0002s0337.1 (32891179)

Aliases : 32891179

Description : Ribosomal protein S13 [Interproscan].

Gene families : OG_01_0002223 (OrthoFinder) Phylogenetic Tree(s): OG0002223_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Vocar.0002s0337.1
Cluster	HCCA: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
Cre06.g272950	30778811, RPS18	Protein biosynthesis.cytosolic ribosome.small subunit...	0.3	OrthoFinder
Cz03g21050.t1	No alias	Ribosomal protein S13 [Interproscan].	0.09	OrthoFinder
Dusal.0003s00026.1	33187489	Ribosomal protein S13 [Interproscan].	0.08	OrthoFinder
EOD07550	No alias	Ribosomal protein S13 [Interproscan].	0.12	OrthoFinder
EOD24485	No alias	Ribosomal protein S13 [Interproscan].	0.12	OrthoFinder
OT_14G03080.1	No alias	Ribosomal protein S13 [Interproscan].	0.07	OrthoFinder
PTI_23G01020.1	No alias	Ribosomal protein S13 [Interproscan].	0.22	OrthoFinder
Sro2117_g315240.1	Contig3258.g25694	40S ribosomal protein S18	0.24	OrthoFinder
SymbC1.scaffold24401.1	24401.1	Ribosomal protein S13 [Interproscan].	0.02	OrthoFinder
TP02G00280.1	No alias	Ribosomal protein S13 [Interproscan].	0.24	OrthoFinder
XM_002505702.1	MICPUN_109369, 109369	Ribosomal protein S18 (RPS18)	0.18	OrthoFinder
XM_003063744.1	MicpuC2_49747, 49747	Ribosomal protein S18 (RPS18)	0.06	OrthoFinder
lcl\|BLLF01000380.1_cds_GFH11171.1_5648	HaLaN_06627, GFH11171	Ribosomal protein S18	0.02	OrthoFinder
lcl\|BLLF01000380.1_cds_GFH11172.1_5649	HaLaN_06628, GFH11172	Ribosomal protein S13 [Interproscan].	0.02	OrthoFinder
lcl\|LHPG02000008.1_cds_PRW56629.1_9755	PRW56629	40S ribosomal S18	0.16	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8495014.1_3544	KAA8495014	40S ribosomal protein S18	0.08	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	Enrichment
CC	GO:0000814	ESCRT II complex	IEP	Enrichment
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Enrichment
BP	GO:0009143	nucleoside triphosphate catabolic process	IEP	Enrichment
BP	GO:0016192	vesicle-mediated transport	IEP	Enrichment
CC	GO:0032993	protein-DNA complex	IEP	Enrichment
BP	GO:0034404	nucleobase-containing small molecule biosynthetic process	IEP	Enrichment
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	Enrichment
CC	GO:0036452	ESCRT complex	IEP	Enrichment
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	Enrichment
CC	GO:0044815	DNA packaging complex	IEP	Enrichment
BP	GO:0046700	heterocycle catabolic process	IEP	Enrichment
MF	GO:0047429	nucleoside-triphosphate diphosphatase activity	IEP	Enrichment
BP	GO:0071985	multivesicular body sorting pathway	IEP	Enrichment
BP	GO:1901292	nucleoside phosphate catabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001892	Ribosomal_S13	15	142

External Links

No external refs found!

Vocar.0002s0337.1 (32891179)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation