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  5. Vocar.0002s0314.1

Vocar.0002s0314.1 (32891162)


Aliases : 32891162

Description : K Homology domain, type 2; Ribosomal protein S3, C-terminal [Interproscan].


Gene families : OG_01_0003293 (OrthoFinder) Phylogenetic Tree(s): OG0003293_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0002s0314.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021462.41 tig00021462_g21604.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.22 OrthoFinder
Cre02.g102250 30785015, RPS3 Protein biosynthesis.cytosolic ribosome.small subunit... 0.2 OrthoFinder
Cz02g33150.t1 No alias K Homology domain, type 2; Ribosomal protein S3,... 0.16 OrthoFinder
Dusal.0669s00001.1 33197930 Ribosomal protein S3, C-terminal; K Homology domain,... 0.03 OrthoFinder
EOD31013 No alias Ribosomal protein S3, C-terminal; K Homology domain,... 0.06 OrthoFinder
OT_04G01280.1 No alias K Homology domain, type 2; Ribosomal protein S3,... 0.12 OrthoFinder
PTI_04G00160.1 No alias K Homology domain, type 2; Ribosomal protein S3,... 0.15 OrthoFinder
Sro694_g188530.1 Contig4437.g33306 40S ribosomal protein S3 0.25 OrthoFinder
SymbC1.scaffold12787.1 12787.1 Ribosomal protein S3, C-terminal [Interproscan]. 0.02 OrthoFinder
TP04G07750.1 No alias K Homology domain, type 2; Ribosomal protein S3,... 0.18 OrthoFinder
XM_002508158.1 MICPUN_91459, 91459 Ribosomal protein S3, C-terminal; K Homology domain,... 0.2 OrthoFinder
XM_003057639.1 MicpuC2_26239, 26239 K Homology domain, type 2; Ribosomal protein S3,... 0.08 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493723.1_4485 KAA8493723 40S ribosomal protein S3-A 0.19 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000814 ESCRT II complex IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0008202 steroid metabolic process IEP Enrichment
BP GO:0016125 sterol metabolic process IEP Enrichment
MF GO:0016860 intramolecular oxidoreductase activity IEP Enrichment
MF GO:0016863 intramolecular oxidoreductase activity, transposing C=C bonds IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0036452 ESCRT complex IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
MF GO:0047750 cholestenol delta-isomerase activity IEP Enrichment
BP GO:0071985 multivesicular body sorting pathway IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001351 Ribosomal_S3_C 106 188
IPR004044 KH_dom_type_2 20 92
No external refs found!