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  5. Vocar.0002s0213.1

Vocar.0002s0213.1 (32890657)


Aliases : 32890657

Description : Domain of unknown function DUF1605; DEAD/DEAH box helicase domain; Helicase-associated domain; Helicase, C-terminal [Interproscan].


Gene families : OG_01_0000129 (OrthoFinder) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0002s0213.1
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
Cre06.g266416 30779154 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder
EOD09087 No alias Helicase, C-terminal; Domain of unknown function... 0.01 OrthoFinder
EOD19502 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
EOD37379 No alias Helicase, C-terminal; Helicase-associated domain [Interproscan]. 0.01 OrthoFinder
OT_03G04780.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
Sro1790_g297740.1 Contig4724.g35072 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic 0.02 OrthoFinder
TP15G01550.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.01 OrthoFinder
XM_002507013.1 MICPUN_77912, 77912 Helicase, C-terminal; Helicase-associated domain;... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0004721 phosphoprotein phosphatase activity IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
BP GO:0016311 dephosphorylation IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
CC GO:0016593 Cdc73/Paf1 complex IEP Enrichment
MF GO:0016791 phosphatase activity IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
MF GO:0042578 phosphoric ester hydrolase activity IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 958 1043
IPR011709 DUF1605 1156 1247
IPR011545 DEAD/DEAH_box_helicase_dom 364 548
IPR001650 Helicase_C 668 812
No external refs found!