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  5. Vocar.0002s0198.1

Vocar.0002s0198.1 (32890551)


Aliases : 32890551

Description : Cryptochrome/DNA photolyase, FAD-binding domain [Interproscan].


Gene families : OG_01_0000085 (OrthoFinder) Phylogenetic Tree(s): OG0000085_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0002s0198.1
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000391.2 tig00000391_g24833.t1 DNA damage response.DNA repair... 0.02 OrthoFinder
Cpa|evm.model.tig00020965.69 tig00020965_g16882.t1 Cryptochrome DASH, chloroplastic/mitochondrial... 0.02 OrthoFinder
Cre02.g078939 30785814 Cryptochrome DASH, chloroplastic/mitochondrial... 0.11 OrthoFinder
Cz04g35200.t1 No alias Cryptochrome/DNA photolyase, FAD-binding domain [Interproscan]. 0.02 OrthoFinder
Cz04g36010.t1 No alias DNA photolyase, N-terminal [Interproscan]. 0.03 OrthoFinder
Cz09g17160.t1 No alias DNA photolyase, N-terminal; Cryptochrome/DNA photolyase,... 0.04 OrthoFinder
EOD11134 No alias Putative Cry-DASH cryptochrome [Ensembl]. 0.03 OrthoFinder
EOD15451 No alias Putative Cry-DASH cryptochrome [Ensembl]. 0.03 OrthoFinder
EOD19626 No alias Cryptochrome/DNA photolyase, FAD-binding domain; DNA... 0.05 OrthoFinder
EOD24687 No alias Deoxyribodipyrimidine photolyase/cryptochrome [Ensembl]. 0.02 OrthoFinder
EOD31738 No alias Deoxyribodipyrimidine photolyase/cryptochrome [Ensembl]. 0.02 OrthoFinder
Sro580_g170080.1 Contig2039.g17523 Deoxyribodipyrimidine photo-lyase 0.01 OrthoFinder
Transcript_contig_56266 56266 DNA photolyase, N-terminal; Cryptochrome/DNA photolyase,... 0.01 OrthoFinder
Transcript_contig_89944 89944 DNA photolyase, N-terminal [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000049.1_cds_GFH06657.1_1134 HaLaN_01325, GFH06657 Photolyase/cryptochrome alpha/beta domain-containing protein 0.03 OrthoFinder
lcl|BLLF01001067.1_cds_GFH16890.1_11367 HaLaN_13407, GFH16890 Deoxyribodipyrimidine photo-lyase 0.04 OrthoFinder
lcl|BLLF01001533.1_cds_GFH19868.1_14345 HaLaN_16893, GFH19868 Photolyase/cryptochrome alpha/beta domain-containing protein 0.03 OrthoFinder
lcl|BLLF01001533.1_cds_GFH19869.1_14346 HaLaN_16894, GFH19869 Photolyase/cryptochrome alpha/beta domain-containing protein 0.05 OrthoFinder
lcl|LHPG02000012.1_cds_PRW45175.1_1806 PRW45175 Deoxyribodipyrimidine photo-lyase isoform A 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004820 glycine-tRNA ligase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006426 glycyl-tRNA aminoacylation IEP Enrichment
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Enrichment
MF GO:0098809 nitrite reductase activity IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
InterPro domains Description Start Stop
IPR005101 Cryptochr/Photolyase_FAD-bd 260 457
No external refs found!