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  5. Vocar.0002s0098.1

Vocar.0002s0098.1 (32890740)


Aliases : 32890740

Description : Proteasome, subunit alpha/beta [Interproscan].


Gene families : OG_01_0004450 (OrthoFinder) Phylogenetic Tree(s): OG0004450_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0002s0098.1
Cluster HCCA: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000808.43 tig00000808_g4429.t1 Protein degradation.26S proteasome.20S core... 0.03 OrthoFinder
Cre06.g280850 30780030 Protein degradation.26S proteasome.20S core... 0.07 OrthoFinder
Cz15g09020.t1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.03 OrthoFinder
EOD07743 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.05 OrthoFinder
PTI_00G00720.1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.06 OrthoFinder
Sro43_g026090.1 Contig2453.g20075 Proteasome subunit beta type-4 (Fragment) 0.1 OrthoFinder
TP11G00860.1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.05 OrthoFinder
XM_002500977.1 MICPUN_107947, 107947 Proteasome, subunit alpha/beta [Interproscan]. 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
CC GO:0000347 THO complex IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
CC GO:0000445 THO complex part of transcription export complex IEP Enrichment
CC GO:0000502 proteasome complex IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009894 regulation of catabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
MF GO:0019825 oxygen binding IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042176 regulation of protein catabolic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 67 249
No external refs found!