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  5. Vocar.0002s0055.1

Vocar.0002s0055.1 (32891143)


Aliases : 32891143

Description : Chlorophyll A-B binding protein [Interproscan].


Gene families : OG_01_0000013 (OrthoFinder) Phylogenetic Tree(s): OG0000013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0002s0055.1
Cluster HCCA: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
Cre01.g066917 30788321, LHCBM1 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder
Cre06.g272650 30779881, LHCA8 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 OrthoFinder
Cre06.g278213 30779171, LHCA6 Chlorophyll a-b binding protein P4, chloroplastic... 0.04 OrthoFinder
Cre06.g283050 30779127, LHCA1 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 OrthoFinder
Cre06.g284250 30779962, LHCBM8 Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder
Cre07.g344950 30774737, LHCA9 Photosystem I chlorophyll a/b-binding protein 5,... 0.02 OrthoFinder
Cre10.g425900 30790196, LHCA5 Chlorophyll a-b binding protein 4, chloroplastic... 0.02 OrthoFinder
Cre10.g452050 30790835, LHCA4 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 OrthoFinder
Cre12.g508750 30791684, LHCA2 Photosystem I chlorophyll a/b-binding protein 6,... 0.02 OrthoFinder
Cre12.g548400 30793460, LHCBM2 Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder
Cre17.g720250 30782643, LHCB4 Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder
Cz01g23030.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
Cz03g26240.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Cz04g09210.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Cz07g02100.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Cz08g00190.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Cz08g11160.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
Cz08g26140.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Cz09g32070.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
Cz10g10160.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
Cz11g23240.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
Cz12g16070.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
Cz13g03240.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Cz15g09060.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Cz15g17110.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Cz16g14150.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
Dusal.0048s00036.1 33189483 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Dusal.0048s00039.1 33189457 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Dusal.0049s00019.1 33200350 Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
Dusal.0152s00006.1 33186191 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Dusal.0206s00001.1 33187265 Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
Dusal.0745s00004.1 33193322 Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
PTI_17G00760.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
PTI_20G01950.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Sro98_g050410.1 Contig3362.g26333 Chloroplastic 0.02 OrthoFinder
Transcript_contig_79793 79793 Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
UNPLg00080.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
Vocar.0028s0157.1 32895586 Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
XM_002499585.1 MICPUN_56050, 56050 Prasinophyte specific chlorophyll a/b-binding protein,... 0.03 OrthoFinder
XM_002505041.1 MICPUN_104964, 104964 Chlorophyll a/b-binding protein, psi-associated,... 0.03 OrthoFinder
XM_002505496.1 MICPUN_95759, 95759 Chlorophyll a/b-binding protein CP26, chloroplast... 0.03 OrthoFinder
XM_002507043.1 MICPUN_104693, 104693 Chlorophyll a/b-binding protein, psi-associated,... 0.02 OrthoFinder
XM_002507237.1 MICPUN_55391, 55391 Chlorophyll a/b-binding protein, chloroplast precursor (LHCA5) 0.02 OrthoFinder
XM_002507443.1 MICPUN_54950, 54950 Chlorophyll a/b-binding protein, chloroplast precursor (LHCA2) 0.02 OrthoFinder
XM_003054893.1 MicpuC2_45156, 45156 Prasinophyte specific chlorophyll a/b-binding protein,... 0.04 OrthoFinder
XM_003055426.1 MicpuC2_46212, 46212 Prasinophyte specific chlorophyll a/b-binding protein (LHCP2.7) 0.03 OrthoFinder
XM_003056380.1 MicpuC2_45265, 45265 Prasinophyte specific chlorophyll a/b-binding protein,... 0.02 OrthoFinder
XM_003056382.1 MicpuC2_70884, 70884 Chlorophyll a/b-binding protein, chloroplast precursor (LHCA2) 0.04 OrthoFinder
XM_003059347.1 MicpuC2_49615, 49615 Prasinophyte specific chlorophyll a/b-binding protein,... 0.02 OrthoFinder
XM_003061061.1 MicpuC2_70879, 70879 Prasinophyte specific chlorophyll a/b-binding protein,... 0.04 OrthoFinder
lcl|BLLF01000182.1_cds_GFH08749.1_3226 HaLaN_03767, GFH08749 Chlorophyll a-b binding protein, chloroplastic 0.02 OrthoFinder
lcl|BLLF01000518.1_cds_GFH12589.1_7066 HaLaN_08302, GFH12589 Chlorophyll a-b binding protein, chloroplastic 0.02 OrthoFinder
lcl|BLLF01000534.1_cds_GFH12729.1_7206 HaLaN_08471, GFH12729 Chlorophyll a-b binding protein, chloroplastic 0.03 OrthoFinder
lcl|BLLF01000682.1_cds_GFH14061.1_8538 HaLaN_10037, GFH14061 Chlorophyll a-b binding protein, chloroplastic 0.04 OrthoFinder
lcl|BLLF01000742.1_cds_GFH14568.1_9045 HaLaN_10649, GFH14568 Chlorophyll a-b binding protein, chloroplastic 0.03 OrthoFinder
lcl|BLLF01000768.1_cds_GFH14802.1_9279 HaLaN_10920, GFH14802 Chlorophyll a-b binding protein, chloroplastic 0.02 OrthoFinder
lcl|BLLF01001042.1_cds_GFH16728.1_11205 HaLaN_13210, GFH16728 Chlorophyll a-b binding protein, chloroplastic 0.03 OrthoFinder
lcl|BLLF01001126.1_cds_GFH17296.1_11773 HaLaN_13902, GFH17296 Chlorophyll a-b binding protein, chloroplastic 0.03 OrthoFinder
lcl|BLLF01002812.1_cds_GFH25433.1_19910 HaLaN_23388, GFH25433 Chlorophyll a-b binding protein, chloroplastic 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61161.1_400 PRW61161 Chlorophyll a b binding CP29 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61250.1_625 PRW61250 Light-harvesting of photosystem I 0.04 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61582.1_286 PRW61582 Cytochrome b-c1 complex subunit Rieske-mitochondrial 0.03 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59323.1_7029 PRW59323 Light-harvesting of photosystem I 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57333.1_9090 PRW57333 Chlorophyll a b-binding apo CP26 precursor 0.03 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56009.1_10248 PRW56009 Light-harvesting of photosystem I 0.02 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56118.1_10249 PRW56118 Light harvesting complex a 0.02 OrthoFinder
lcl|LHPG02000010.1_cds_PRW50945.1_980 PRW50945 Chlorophyll a b-binding 0.02 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45536.1_1258 PRW45536 Light-harvesting of photosystem I 0.04 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45697.1_1257 PRW45697 Light-harvesting of photosystem I 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004807 triose-phosphate isomerase activity IEP Enrichment
MF GO:0005506 iron ion binding IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Enrichment
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Enrichment
MF GO:0016851 magnesium chelatase activity IEP Enrichment
MF GO:0016860 intramolecular oxidoreductase activity IEP Enrichment
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
BP GO:0019748 secondary metabolic process IEP Enrichment
BP GO:0030638 polyketide metabolic process IEP Enrichment
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Enrichment
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Enrichment
MF GO:0051920 peroxiredoxin activity IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 55 220
No external refs found!