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  5. Vocar.0002s0012.1

Vocar.0002s0012.1 (32890573)


Aliases : 32890573

Description : Ferredoxin, chloroplast transit peptide; 2Fe-2S ferredoxin-type iron-sulfur binding domain [Interproscan].


Gene families : OG_01_0000864 (OrthoFinder) Phylogenetic Tree(s): OG0000864_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0002s0012.1
Cluster HCCA: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000194.35 tig00000194_g14763.t1 Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre07.g334800 30775099, FDX4 Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre14.g626700 30776503, PETF Photosynthesis.photophosphorylation.linear electron... 0.06 OrthoFinder
OT_17G00360.1 No alias 2Fe-2S ferredoxin-type iron-sulfur binding domain [Interproscan]. 0.02 OrthoFinder
Sro51_chlor_g030260.1 PetF PetF 0.02 OrthoFinder
XM_002504446.1 MICPUN_61126, 61126 Ferredoxin, chloroplast precursor 0.03 OrthoFinder
XM_002508558.1 MICPUN_96644, 96644 Ferredoxin, chloroplast precursor (PETF3) 0.04 OrthoFinder
XM_003059839.1 MicpuC2_27711, 27711 Ferredoxin, chloroplast precursor (PETF1) 0.03 OrthoFinder
XM_003064089.1 MicpuC2_30100, 30100 Ferredoxin, chloroplast precursor (PETF3) 0.04 OrthoFinder
lcl|BLLF01001282.1_cds_GFH18315.1_12792 HaLaN_15094, GFH18315 Ferredoxin 0.03 OrthoFinder
lcl|LHPG02000023.1_cds_PRW20534.1_5466 PRW20534 Chloroplast ferredoxin 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity IEA Interproscan
MF GO:0051536 iron-sulfur cluster binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0005507 copper ion binding IEP Enrichment
BP GO:0006631 fatty acid metabolic process IEP Enrichment
CC GO:0009522 photosystem I IEP Enrichment
MF GO:0015035 protein-disulfide reductase activity IEP Enrichment
MF GO:0015036 disulfide oxidoreductase activity IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Enrichment
InterPro domains Description Start Stop
IPR001041 2Fe-2S_ferredoxin-type 46 114
IPR023383 Ferredoxin_transit_pept 1 34
No external refs found!