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  5. Vocar.0001s1633.1

Vocar.0001s1633.1 (32885235)


Aliases : 32885235

Description : Histone H2A/H2B/H3; Histone H2A, C-terminal domain [Interproscan].


Gene families : OG_01_0000046 (OrthoFinder) Phylogenetic Tree(s): OG0000046_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0001s1633.1
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021108.27 tig00021108_g18317.t1 Chromatin organisation.histones.H2A-type histone 0.01 OrthoFinder
Cre06.g264750 30778682, HTA14 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre06.g264950 30779952 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre06.g265350 30779523 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre06.g266700 30779158 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre06.g268050 30779224, HTA10 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre06.g268300 30778781, HTA9 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre06.g271350 30779391 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre06.g273900 30779778 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre06.g274200 30778751 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre06.g274800 30780111, HTA26 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre06.g275850 30779335 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre06.g276500 30778822, HTA23 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre06.g276950 30778754, HTA24 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre12.g504500 30793209 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre12.g504750 30792225 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre12.g505550 30793129 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre12.g506250 30793152, HTA18 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre13.g567700 30783996 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre13.g570100 30784159, HTA2 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre13.g590800 30783997, HTA37 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre13.g591150 30784726, HTA38 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre17.g708550 30781878, HTA20 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre17.g709200 30782358 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre17.g710400 30782701, HTA19 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre17.g711700 30781638, HTA5 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre17.g713400 30781819 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre17.g714500 30782017, HTA1 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cz02g02050.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.03 OrthoFinder
Cz05g04180.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
Cz07g08180.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
Cz08g27130.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
Cz18g11100.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
Dusal.0093s00031.1 33185335 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.01 OrthoFinder
Dusal.0093s00037.1 33185342 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.01 OrthoFinder
Dusal.0688s00003.1 33202688 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.01 OrthoFinder
EOD08304 No alias Putative histone H2A [Ensembl]. 0.02 OrthoFinder
EOD14007 No alias Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.02 OrthoFinder
EOD22956 No alias Putative histone H2A [Ensembl]. 0.03 OrthoFinder
EOD22963 No alias Putative histone H2A [Ensembl]. 0.03 OrthoFinder
OT_08G01910.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
OT_12G00910.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
OT_16G01100.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.03 OrthoFinder
PTI_06G01940.1 No alias Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.02 OrthoFinder
PTI_06G02110.1 No alias Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.02 OrthoFinder
Sro120_g058300.1 Contig2411.g19708 H2A.z 0.01 OrthoFinder
Sro311_g114190.1 Contig909.g9534 Histone H2A 0.01 OrthoFinder
Sro392_g133380.1 Contig4514.g33844 Histone H2A 0.02 OrthoFinder
Sro470_g149450.1 Contig850.g9339 Histone H2A 0.02 OrthoFinder
TP05G07700.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
Vocar.0002s0391.1 32890987 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.03 OrthoFinder
XM_003054928.1 MicpuC2_12375, 12375 Histone H2A 0.02 OrthoFinder
XM_003058838.1 MicpuC2_17393, 17393 Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.02 OrthoFinder
XM_003063174.1 MicpuC2_11887, 11887 Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003725 double-stranded RNA binding IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0005506 iron ion binding IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006771 riboflavin metabolic process IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008199 ferric iron binding IEP Enrichment
BP GO:0009231 riboflavin biosynthetic process IEP Enrichment
CC GO:0009349 riboflavin synthase complex IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
CC GO:0016469 proton-transporting two-sector ATPase complex IEP Enrichment
CC GO:0016471 vacuolar proton-transporting V-type ATPase complex IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
CC GO:0033176 proton-transporting V-type ATPase complex IEP Enrichment
BP GO:0042726 flavin-containing compound metabolic process IEP Enrichment
BP GO:0042727 flavin-containing compound biosynthetic process IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0048878 chemical homeostasis IEP Enrichment
BP GO:0050801 ion homeostasis IEP Enrichment
BP GO:0055065 metal ion homeostasis IEP Enrichment
BP GO:0055070 copper ion homeostasis IEP Enrichment
BP GO:0055076 transition metal ion homeostasis IEP Enrichment
BP GO:0055080 cation homeostasis IEP Enrichment
BP GO:0070070 proton-transporting V-type ATPase complex assembly IEP Enrichment
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Enrichment
BP GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0098771 inorganic ion homeostasis IEP Enrichment
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 107 138
IPR007125 Histone_H2A/H2B/H3 24 106
No external refs found!