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Aliases : 32885852
Description : WD40 repeat; Histone-binding protein RBBP4, N-terminal [Interproscan].
Gene families : OG_01_0002321 (OrthoFinder) Phylogenetic Tree(s): OG0002321_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Vocar.0001s1447.1 | |
| Cluster | HCCA: Cluster_22 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00001493.9 | tig00001493_g8984.t1 | No description available | 0.05 | OrthoFinder | |
| Cre17.g724850 | 30782603 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana | 0.05 | OrthoFinder | |
| Cz06g32260.t1 | No alias | Histone-binding protein RBBP4, N-terminal [Interproscan]. | 0.04 | OrthoFinder | |
| Cz06g32270.t1 | No alias | WD40 repeat [Interproscan]. | 0.06 | OrthoFinder | |
| Dusal.1675s00001.1 | 33198115 | Histone-binding protein RBBP4, N-terminal [Interproscan]. | 0.02 | OrthoFinder | |
| EOD10636 | No alias | Histone-binding protein RBBP4, N-terminal; WD40 repeat... | 0.08 | OrthoFinder | |
| EOD30618 | No alias | Histone-binding protein RBBP4, N-terminal; WD40 repeat... | 0.02 | OrthoFinder | |
| OT_06G00690.1 | No alias | Histone-binding protein RBBP4, N-terminal; WD40 repeat... | 0.05 | OrthoFinder | |
| PTI_15G02490.1 | No alias | Histone-binding protein RBBP4, N-terminal; WD40 repeat... | 0.04 | OrthoFinder | |
| Sro109_g054490.1 | Contig4753.g35231 | Rich WD repeat-containing protein 1 | 0.01 | OrthoFinder | |
| Sro109_g054490.2 | No alias | WD40 repeat; Histone-binding protein RBBP4, N-terminal... | 0.06 | OrthoFinder | |
| TP01G02670.1 | No alias | WD40 repeat; Histone-binding protein RBBP4, N-terminal... | 0.05 | OrthoFinder | |
| Transcript_contig_89506 | 89506 | Histone-binding protein RBBP4, N-terminal; WD40 repeat... | 0.04 | OrthoFinder | |
| XM_002500334.1 | MICPUN_80233, 80233 | Histone-binding protein RBBP4, N-terminal; WD40 repeat... | 0.07 | OrthoFinder | |
| lcl|BLLF01000177.1_cds_GFH08685.1_3162 | HaLaN_03686, GFH08685 | Glutamate-rich WD repeat domain-containing protein | 0.02 | OrthoFinder | |
| lcl|LHPG02000003.1_cds_PRW59588.1_6370 | PRW59588 | WD40 repeat | 0.04 | OrthoFinder | |
| lcl|VRMN01000001.1_cds_KAA8499516.1_8469 | KAA8499516 | Glutamate-rich WD repeat-containing protein 1 | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| MF | GO:0004386 | helicase activity | IEP | Enrichment |
| MF | GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity | IEP | Enrichment |
| MF | GO:0005337 | nucleoside transmembrane transporter activity | IEP | Enrichment |
| CC | GO:0005643 | nuclear pore | IEP | Enrichment |
| CC | GO:0005730 | nucleolus | IEP | Enrichment |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006364 | rRNA processing | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006399 | tRNA metabolic process | IEP | Enrichment |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
| BP | GO:0008033 | tRNA processing | IEP | Enrichment |
| MF | GO:0008094 | ATPase, acting on DNA | IEP | Enrichment |
| MF | GO:0008168 | methyltransferase activity | IEP | Enrichment |
| MF | GO:0008170 | N-methyltransferase activity | IEP | Enrichment |
| MF | GO:0008175 | tRNA methyltransferase activity | IEP | Enrichment |
| BP | GO:0009451 | RNA modification | IEP | Enrichment |
| BP | GO:0015858 | nucleoside transport | IEP | Enrichment |
| MF | GO:0015932 | nucleobase-containing compound transmembrane transporter activity | IEP | Enrichment |
| BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
| BP | GO:0016072 | rRNA metabolic process | IEP | Enrichment |
| MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Enrichment |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Enrichment |
| MF | GO:0016763 | pentosyltransferase activity | IEP | Enrichment |
| MF | GO:0016887 | ATPase | IEP | Enrichment |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | Enrichment |
| MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Enrichment |
| CC | GO:0030684 | preribosome | IEP | Enrichment |
| CC | GO:0032040 | small-subunit processome | IEP | Enrichment |
| BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Enrichment |
| BP | GO:1901264 | carbohydrate derivative transport | IEP | Enrichment |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| MF | GO:1901505 | carbohydrate derivative transmembrane transporter activity | IEP | Enrichment |
| BP | GO:1901642 | nucleoside transmembrane transport | IEP | Enrichment |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Enrichment |
| No external refs found! |