Vocar.0001s1443.1 (32884242)

Aliases : 32884242

Description : TOPRIM domain; DNA topoisomerase, type IA, central [Interproscan].

Gene families : OG_01_0001163 (OrthoFinder) Phylogenetic Tree(s): OG0001163_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Vocar.0001s1443.1
Cluster	HCCA: Cluster_2

Target	Alias	Description	ECC score	Gene Family Method
Cz06g27170.t1	No alias	DNA topoisomerase, type IA, central; TOPRIM domain...	0.03	OrthoFinder
Transcript_contig_550	550	DNA topoisomerase, type IA, central; TOPRIM domain...	0.02	OrthoFinder
lcl\|VRMN01000007.1_cds_KAA8493337.1_9638	KAA8493337	DNA topoisomerase 3-beta	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	Enrichment
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	Enrichment
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0003872	6-phosphofructokinase activity	IEP	Enrichment
MF	GO:0004484	mRNA guanylyltransferase activity	IEP	Enrichment
MF	GO:0004659	prenyltransferase activity	IEP	Enrichment
MF	GO:0004674	protein serine/threonine kinase activity	IEP	Enrichment
MF	GO:0005096	GTPase activator activity	IEP	Enrichment
MF	GO:0005337	nucleoside transmembrane transporter activity	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	Enrichment
BP	GO:0006401	RNA catabolic process	IEP	Enrichment
BP	GO:0006402	mRNA catabolic process	IEP	Enrichment
BP	GO:0006508	proteolysis	IEP	Enrichment
MF	GO:0008192	RNA guanylyltransferase activity	IEP	Enrichment
MF	GO:0008318	protein prenyltransferase activity	IEP	Enrichment
MF	GO:0008443	phosphofructokinase activity	IEP	Enrichment
BP	GO:0009056	catabolic process	IEP	Enrichment
BP	GO:0009057	macromolecule catabolic process	IEP	Enrichment
BP	GO:0009452	7-methylguanosine RNA capping	IEP	Enrichment
BP	GO:0009892	negative regulation of metabolic process	IEP	Enrichment
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Enrichment
BP	GO:0010629	negative regulation of gene expression	IEP	Enrichment
BP	GO:0015858	nucleoside transport	IEP	Enrichment
BP	GO:0015931	nucleobase-containing compound transport	IEP	Enrichment
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Enrichment
BP	GO:0016070	RNA metabolic process	IEP	Enrichment
BP	GO:0016071	mRNA metabolic process	IEP	Enrichment
MF	GO:0016779	nucleotidyltransferase activity	IEP	Enrichment
BP	GO:0018342	protein prenylation	IEP	Enrichment
MF	GO:0019200	carbohydrate kinase activity	IEP	Enrichment
CC	GO:0030014	CCR4-NOT complex	IEP	Enrichment
MF	GO:0030695	GTPase regulator activity	IEP	Enrichment
MF	GO:0034450	ubiquitin-ubiquitin ligase activity	IEP	Enrichment
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	Enrichment
BP	GO:0036260	RNA capping	IEP	Enrichment
BP	GO:0044248	cellular catabolic process	IEP	Enrichment
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Enrichment
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	Enrichment
BP	GO:0046700	heterocycle catabolic process	IEP	Enrichment
MF	GO:0061630	ubiquitin protein ligase activity	IEP	Enrichment
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	Enrichment
MF	GO:0070568	guanylyltransferase activity	IEP	Enrichment
MF	GO:0070569	uridylyltransferase activity	IEP	Enrichment
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Enrichment
BP	GO:0071702	organic substance transport	IEP	Enrichment
BP	GO:0097354	prenylation	IEP	Enrichment
CC	GO:0140535	intracellular protein-containing complex	IEP	Enrichment
BP	GO:1901264	carbohydrate derivative transport	IEP	Enrichment
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Enrichment
BP	GO:1901575	organic substance catabolic process	IEP	Enrichment
BP	GO:1901642	nucleoside transmembrane transport	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR013497	Topo_IA_cen	178	564
IPR006171	TOPRIM_domain	6	135

External Links

No external refs found!

Vocar.0001s1443.1 (32884242)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation