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  5. Vocar.0001s1421.1

Vocar.0001s1421.1 (32884790)


Aliases : 32884790

Description : Ribosomal protein S7 domain [Interproscan].


Gene families : OG_01_0003369 (OrthoFinder) Phylogenetic Tree(s): OG0003369_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0001s1421.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021332.10 tig00021332_g20326.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 OrthoFinder
Cre06.g290950 30779633, RPS5 Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 OrthoFinder
Cz11g15220.t1 No alias Ribosomal protein S7 domain [Interproscan]. 0.12 OrthoFinder
Dusal.0524s00007.1 33201137 Ribosomal protein S7 domain [Interproscan]. 0.08 OrthoFinder
EOD09941 No alias Ribosomal protein S7 domain [Interproscan]. 0.08 OrthoFinder
OT_07G00060.1 No alias Ribosomal protein S7 domain [Interproscan]. 0.07 OrthoFinder
PTI_15G01120.1 No alias Ribosomal protein S7 domain [Interproscan]. 0.15 OrthoFinder
Sro1048_g235290.1 Contig3784.g29053 40S ribosomal protein S5 (Fragment) 0.15 OrthoFinder
SymbC1.scaffold917.7 917.7 Ribosomal protein S7 domain [Interproscan]. 0.03 OrthoFinder
TP14G00980.1 No alias Ribosomal protein S7 domain [Interproscan]. 0.11 OrthoFinder
Transcript_contig_90641 90641 Ribosomal protein S7 domain [Interproscan]. 0.02 OrthoFinder
XM_002501532.1 MICPUN_90425, 90425 Ribosomal protein S7 domain [Interproscan]. 0.09 OrthoFinder
XM_003062230.1 MicpuC2_48485, 48485 Ribosomal protein S7 domain [Interproscan]. 0.05 OrthoFinder
lcl|LHPG02000022.1_cds_PRW20750.1_5231 PRW20750 40S ribosomal S5 0.12 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497970.1_6923 KAA8497970 40S ribosomal protein S5 0.07 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
InterPro domains Description Start Stop
IPR023798 Ribosomal_S7_dom 52 193
No external refs found!