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  5. Vocar.0001s1404.1

Vocar.0001s1404.1 (32884152)


Aliases : 32884152

Description : Ribosomal protein S11 [Interproscan].


Gene families : OG_01_0000909 (OrthoFinder) Phylogenetic Tree(s): OG0000909_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0001s1404.1
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Sro51_chlor_g029670.1 Rps13 Rps13 0.01 OrthoFinder
Sro51_chlor_g029680.1 Rps11 Rps11 0.01 OrthoFinder
Sro884_mit_g215880.1 Rps13 Rps13 0.01 OrthoFinder
SymbC1.scaffold482.8 482.8 Ribosomal protein S11; Ribosomal protein L36; Peptidase... 0.01 OrthoFinder
Transcript_contig_57743 57743 Ribosomal protein S13 [Interproscan]. 0.02 OrthoFinder
XM_002506993.1 MICPUN_89270, 89270 Ribosomal protein S13, chloroplast precursor (RPS13) 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004197 cysteine-type endopeptidase activity IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0030151 molybdenum ion binding IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
BP GO:0051604 protein maturation IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
BP GO:0071586 CAAX-box protein processing IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR001971 Ribosomal_S11 116 225
No external refs found!