Vocar.0001s1340.1 (32885040)

Aliases : 32885040

Description : DEAD/DEAH box helicase domain; Helicase, C-terminal [Interproscan].

Gene families : OG_01_0001185 (OrthoFinder) Phylogenetic Tree(s): OG0001185_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Vocar.0001s1340.1
Cluster	HCCA: Cluster_3

Target	Alias	Description	ECC score	Gene Family Method
Cre10.g436650	30789761	DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana	0.04	OrthoFinder
Dusal.0045s00001.1	33191641	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.02	OrthoFinder
OT_05G03300.1	No alias	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.03	OrthoFinder
OT_10G03270.1	No alias	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.02	OrthoFinder
PTI_20G02340.1	No alias	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.04	OrthoFinder
XM_002503395.1	MICPUN_59763, 59763	Helicase, C-terminal; K Homology domain, type 1;...	0.04	OrthoFinder
lcl\|LHPG02000026.1_cds_PRW18294.1_5877	PRW18294	DEAD-box ATP-dependent RNA helicase 50	0.04	OrthoFinder
lcl\|LHPG02000029.1_cds_PRW05784.1_6102	PRW05784	DEAD-box ATP-dependent RNA helicase 39	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	Enrichment
CC	GO:0000808	origin recognition complex	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003678	DNA helicase activity	IEP	Enrichment
MF	GO:0003690	double-stranded DNA binding	IEP	Enrichment
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Enrichment
MF	GO:0003916	DNA topoisomerase activity	IEP	Enrichment
MF	GO:0004386	helicase activity	IEP	Enrichment
MF	GO:0004518	nuclease activity	IEP	Enrichment
MF	GO:0004519	endonuclease activity	IEP	Enrichment
MF	GO:0004520	endodeoxyribonuclease activity	IEP	Enrichment
MF	GO:0004531	deoxyribonuclease II activity	IEP	Enrichment
MF	GO:0004536	deoxyribonuclease activity	IEP	Enrichment
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEP	Enrichment
CC	GO:0005575	cellular_component	IEP	Enrichment
CC	GO:0005634	nucleus	IEP	Enrichment
CC	GO:0005664	nuclear origin of replication recognition complex	IEP	Enrichment
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Enrichment
BP	GO:0006259	DNA metabolic process	IEP	Enrichment
BP	GO:0006260	DNA replication	IEP	Enrichment
BP	GO:0006265	DNA topological change	IEP	Enrichment
BP	GO:0006270	DNA replication initiation	IEP	Enrichment
BP	GO:0006275	regulation of DNA replication	IEP	Enrichment
BP	GO:0006281	DNA repair	IEP	Enrichment
BP	GO:0006298	mismatch repair	IEP	Enrichment
BP	GO:0006302	double-strand break repair	IEP	Enrichment
BP	GO:0006303	double-strand break repair via nonhomologous end joining	IEP	Enrichment
BP	GO:0006364	rRNA processing	IEP	Enrichment
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Enrichment
BP	GO:0006807	nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0006887	exocytosis	IEP	Enrichment
BP	GO:0006950	response to stress	IEP	Enrichment
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Enrichment
MF	GO:0008094	ATPase, acting on DNA	IEP	Enrichment
BP	GO:0008150	biological_process	IEP	Enrichment
BP	GO:0008152	metabolic process	IEP	Enrichment
BP	GO:0009058	biosynthetic process	IEP	Enrichment
BP	GO:0009059	macromolecule biosynthetic process	IEP	Enrichment
BP	GO:0009987	cellular process	IEP	Enrichment
BP	GO:0010639	negative regulation of organelle organization	IEP	Enrichment
BP	GO:0016072	rRNA metabolic process	IEP	Enrichment
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	Enrichment
MF	GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	IEP	Enrichment
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Enrichment
MF	GO:0016887	ATPase	IEP	Enrichment
MF	GO:0016889	endodeoxyribonuclease activity, producing 3'-phosphomonoesters	IEP	Enrichment
MF	GO:0016894	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters	IEP	Enrichment
MF	GO:0030145	manganese ion binding	IEP	Enrichment
MF	GO:0030151	molybdenum ion binding	IEP	Enrichment
CC	GO:0030684	preribosome	IEP	Enrichment
CC	GO:0030688	preribosome, small subunit precursor	IEP	Enrichment
MF	GO:0030983	mismatched DNA binding	IEP	Enrichment
BP	GO:0032780	negative regulation of ATPase activity	IEP	Enrichment
BP	GO:0032940	secretion by cell	IEP	Enrichment
CC	GO:0032991	protein-containing complex	IEP	Enrichment
BP	GO:0033043	regulation of organelle organization	IEP	Enrichment
BP	GO:0033044	regulation of chromosome organization	IEP	Enrichment
BP	GO:0033554	cellular response to stress	IEP	Enrichment
MF	GO:0034061	DNA polymerase activity	IEP	Enrichment
BP	GO:0034470	ncRNA processing	IEP	Enrichment
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Enrichment
CC	GO:0042555	MCM complex	IEP	Enrichment
BP	GO:0043086	negative regulation of catalytic activity	IEP	Enrichment
BP	GO:0043170	macromolecule metabolic process	IEP	Enrichment
CC	GO:0043226	organelle	IEP	Enrichment
CC	GO:0043227	membrane-bounded organelle	IEP	Enrichment
CC	GO:0043229	intracellular organelle	IEP	Enrichment
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Enrichment
BP	GO:0043462	regulation of ATPase activity	IEP	Enrichment
BP	GO:0044092	negative regulation of molecular function	IEP	Enrichment
BP	GO:0044237	cellular metabolic process	IEP	Enrichment
BP	GO:0044238	primary metabolic process	IEP	Enrichment
BP	GO:0044249	cellular biosynthetic process	IEP	Enrichment
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Enrichment
BP	GO:0046483	heterocycle metabolic process	IEP	Enrichment
BP	GO:0046903	secretion	IEP	Enrichment
MF	GO:0046914	transition metal ion binding	IEP	Enrichment
BP	GO:0050790	regulation of catalytic activity	IEP	Enrichment
BP	GO:0050896	response to stimulus	IEP	Enrichment
BP	GO:0051095	regulation of helicase activity	IEP	Enrichment
BP	GO:0051097	negative regulation of helicase activity	IEP	Enrichment
BP	GO:0051129	negative regulation of cellular component organization	IEP	Enrichment
BP	GO:0051716	cellular response to stimulus	IEP	Enrichment
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	IEP	Enrichment
BP	GO:0065009	regulation of molecular function	IEP	Enrichment
BP	GO:0071103	DNA conformation change	IEP	Enrichment
BP	GO:0071704	organic substance metabolic process	IEP	Enrichment
BP	GO:0090304	nucleic acid metabolic process	IEP	Enrichment
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Enrichment
BP	GO:0140352	export from cell	IEP	Enrichment
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Enrichment
BP	GO:1901576	organic substance biosynthetic process	IEP	Enrichment
BP	GO:1905462	regulation of DNA duplex unwinding	IEP	Enrichment
BP	GO:1905463	negative regulation of DNA duplex unwinding	IEP	Enrichment
BP	GO:1905774	regulation of DNA helicase activity	IEP	Enrichment
BP	GO:1905775	negative regulation of DNA helicase activity	IEP	Enrichment
BP	GO:2001251	negative regulation of chromosome organization	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	584	740
IPR011545	DEAD/DEAH_box_helicase_dom	362	530

External Links

No external refs found!

Vocar.0001s1340.1 (32885040)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation