- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : 32884950
Description : LSM domain, eukaryotic/archaea-type [Interproscan].
Gene families : OG_01_0004507 (OrthoFinder) Phylogenetic Tree(s): OG0004507_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Vocar.0001s1251.1 | |
| Cluster | HCCA: Cluster_12 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00000663.16 | tig00000663_g2949.t1 | RNA processing.RNA splicing.U6-associated LSm accessory... | 0.01 | OrthoFinder | |
| EOD26115 | No alias | LSM domain, eukaryotic/archaea-type [Interproscan]. | 0.02 | OrthoFinder | |
| lcl|LHPG02000003.1_cds_PRW59492.1_6241 | PRW59492 | U6 snRNA-associated Sm LSm2 | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000226 | microtubule cytoskeleton organization | IEP | Enrichment |
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | Enrichment |
| MF | GO:0002161 | aminoacyl-tRNA editing activity | IEP | Enrichment |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | Enrichment |
| CC | GO:0005759 | mitochondrial matrix | IEP | Enrichment |
| BP | GO:0006310 | DNA recombination | IEP | Enrichment |
| BP | GO:0006333 | chromatin assembly or disassembly | IEP | Enrichment |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Enrichment |
| BP | GO:0007010 | cytoskeleton organization | IEP | Enrichment |
| BP | GO:0007051 | spindle organization | IEP | Enrichment |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0010564 | regulation of cell cycle process | IEP | Enrichment |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | Enrichment |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | Enrichment |
| BP | GO:0018208 | peptidyl-proline modification | IEP | Enrichment |
| BP | GO:0022402 | cell cycle process | IEP | Enrichment |
| CC | GO:0031974 | membrane-enclosed lumen | IEP | Enrichment |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Enrichment |
| BP | GO:0032954 | regulation of cytokinetic process | IEP | Enrichment |
| BP | GO:0032955 | regulation of division septum assembly | IEP | Enrichment |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Enrichment |
| CC | GO:0043233 | organelle lumen | IEP | Enrichment |
| BP | GO:0044087 | regulation of cellular component biogenesis | IEP | Enrichment |
| BP | GO:0051225 | spindle assembly | IEP | Enrichment |
| BP | GO:0051301 | cell division | IEP | Enrichment |
| MF | GO:0051499 | D-aminoacyl-tRNA deacylase activity | IEP | Enrichment |
| MF | GO:0051920 | peroxiredoxin activity | IEP | Enrichment |
| MF | GO:0052689 | carboxylic ester hydrolase activity | IEP | Enrichment |
| CC | GO:0070013 | intracellular organelle lumen | IEP | Enrichment |
| CC | GO:0070652 | HAUS complex | IEP | Enrichment |
| BP | GO:0070925 | organelle assembly | IEP | Enrichment |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Enrichment |
| MF | GO:0098599 | palmitoyl hydrolase activity | IEP | Enrichment |
| BP | GO:1901891 | regulation of cell septum assembly | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001163 | LSM_dom_euk/arc | 7 | 72 |
| No external refs found! |