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  5. Vocar.0001s1034.1

Vocar.0001s1034.1 (32884968)


Aliases : 32884968

Description : Threonine dehydratase, ACT-like domain; Pyridoxal-phosphate dependent enzyme [Interproscan].


Gene families : OG_01_0000211 (OrthoFinder) Phylogenetic Tree(s): OG0000211_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0001s1034.1
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_56337 56337 Pyridoxal-phosphate dependent enzyme [Interproscan]. 0.02 OrthoFinder
XM_003061105.1 MicpuC2_63278, 63278 Pyridoxal-phosphate dependent enzyme; Threonine... 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0005096 GTPase activator activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
MF GO:0008047 enzyme activator activity IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
MF GO:0030695 GTPase regulator activity IEP Enrichment
BP GO:0031123 RNA 3'-end processing IEP Enrichment
BP GO:0031124 mRNA 3'-end processing IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043138 3'-5' DNA helicase activity IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001721 TD_ACT-like 202 293
IPR001721 TD_ACT-like 309 373
IPR001926 PLP-dep 78 187
No external refs found!