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  5. Vocar.0001s0920.1

Vocar.0001s0920.1 (32884540)


Aliases : 32884540

Description : NGN domain; KOW; Spt5 transcription elongation factor, N-terminal [Interproscan].


Gene families : OG_01_0002170 (OrthoFinder) Phylogenetic Tree(s): OG0002170_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0001s0920.1
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
Cre01.g031050 30788604 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder
EOD20335 No alias Spt5 C-terminal nonapeptide repeat binding Spt4; NGN... 0.02 OrthoFinder
UNPLg00509.t1 No alias Spt5 transcription elongation factor, N-terminal; NGN... 0.02 OrthoFinder
XM_002499716.1 MICPUN_55794, 55794 Transcription elongation-nucleosome displacement protein 0.02 OrthoFinder
lcl|BLLF01000341.1_cds_GFH10730.1_5207 HaLaN_06096, GFH10730 Transcription elongation factor SPT5 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEP Enrichment
MF GO:0008430 selenium binding IEP Enrichment
BP GO:0008654 phospholipid biosynthetic process IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
InterPro domains Description Start Stop
IPR022581 Spt5_N 80 168
IPR005100 NGN-domain 174 257
IPR005824 KOW 489 512
No external refs found!