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  5. Vocar.0001s0771.1

Vocar.0001s0771.1 (32885988)


Aliases : 32885988

Description : UBX domain; SEP domain [Interproscan].


Gene families : OG_01_0002172 (OrthoFinder) Phylogenetic Tree(s): OG0002172_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0001s0771.1
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_78603 78603 UBX domain; UBA-like domain; SEP domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59801.1_6334 PRW59801 UBA and UBX domain-containing protein 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001012 UBX_dom 207 283
IPR012989 SEP_domain 103 177
No external refs found!