1. Home
  2. Species
  3. Volvox carteri
  4. Sequence
  5. Vocar.0001s0725.1

Vocar.0001s0725.1 (32884529)


Aliases : 32884529

Description : Sec23/Sec24, trunk domain; Sec23/Sec24, helical domain; Zinc finger, Sec23/Sec24-type; Sec23/Sec24 beta-sandwich [Interproscan].


Gene families : OG_01_0000893 (OrthoFinder) Phylogenetic Tree(s): OG0000893_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0001s0725.1
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000829.3 tig00000829_g4645.t1 Vesicle trafficking.Coat protein II (COPII) coatomer... 0.03 OrthoFinder
Cre01.g035850 30788608, SEC24B Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 OrthoFinder
Cz06g26070.t1 No alias Sec23/Sec24, trunk domain; Sec23/Sec24, helical domain;... 0.02 OrthoFinder
Dusal.0045s00020.1 33191659 Zinc finger, Sec23/Sec24-type; Sec23/Sec24, trunk domain... 0.02 OrthoFinder
EOD29127 No alias Secretory protein 24B [Ensembl]. 0.03 OrthoFinder
EOD35905 No alias Sec23/Sec24 beta-sandwich; Sec23/Sec24, trunk domain... 0.02 OrthoFinder
PTI_11G00980.1 No alias Gelsolin-like domain; Sec23/Sec24, helical domain;... 0.02 OrthoFinder
Sro196_g083380.1 Contig3206.g25334 Transport protein SEC24 0.02 OrthoFinder
Transcript_contig_54514 54514 Sec23/Sec24 beta-sandwich; Zinc finger,... 0.03 OrthoFinder
XM_003055317.1 MicpuC2_49909, 49909 Sec23/Sec24 beta-sandwich; Sec23/Sec24, helical domain;... 0.02 OrthoFinder
XM_003061771.1 MicpuC2_28751, 28751 Gelsolin-like domain; Sec23/Sec24, helical domain;... 0.02 OrthoFinder
lcl|BLLF01000072.1_cds_GFH07061.1_1538 HaLaN_01810, GFH07061 COP-II coat subunit 0.01 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59573.1_6417 PRW59573 Transport Sec24-like protein 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW60099.1_6260 PRW60099 Transport Sec24-like protein 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499730.1_8683 KAA8499730 Protein transport protein Sec24-like 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
CC GO:0030127 COPII vesicle coat IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004133 glycogen debranching enzyme activity IEP Enrichment
MF GO:0004134 4-alpha-glucanotransferase activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004181 metallocarboxypeptidase activity IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
MF GO:0004620 phospholipase activity IEP Enrichment
MF GO:0004645 1,4-alpha-oligoglucan phosphorylase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0004819 glutamine-tRNA ligase activity IEP Enrichment
MF GO:0005049 nuclear export signal receptor activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Enrichment
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008184 glycogen phosphorylase activity IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008235 metalloexopeptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
MF GO:0008241 peptidyl-dipeptidase activity IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016298 lipase activity IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
CC GO:0016592 mediator complex IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016758 hexosyltransferase activity IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
CC GO:0030119 AP-type membrane coat adaptor complex IEP Enrichment
CC GO:0030131 clathrin adaptor complex IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140142 nucleocytoplasmic carrier activity IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR012990 Sec23_24_beta_S 703 788
IPR006900 Sec23/24_helical_dom 799 897
IPR006896 Sec23/24_trunk_dom 463 698
IPR006895 Znf_Sec23_Sec24 388 426
No external refs found!