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  5. Vocar.0001s0592.1

Vocar.0001s0592.1 (32884816)


Aliases : 32884816

Description : SKI-interacting protein SKIP, SNW domain [Interproscan].


Gene families : OG_01_0002176 (OrthoFinder) Phylogenetic Tree(s): OG0002176_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0001s0592.1
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000944.22 tig00000944_g5945.t1 RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder
Cre01.g051100 30788938 RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder
Sro178_g078130.1 Contig275.g3538 SNW/SKI-interacting protein 0.01 OrthoFinder
XM_002507543.1 MICPUN_55191, 55191 Gamyb-binding protein (SKIP) 0.02 OrthoFinder
lcl|BLLF01003283.1_cds_GFH26905.1_21382 HaLaN_25136, GFH26905 SKIP_SNW domain-containing protein 0.01 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
CC GO:0005681 spliceosomal complex IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0003951 NAD+ kinase activity IEP Enrichment
MF GO:0005047 signal recognition particle binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005785 signal recognition particle receptor complex IEP Enrichment
CC GO:0005963 magnesium-dependent protein serine/threonine phosphatase complex IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006739 NADP metabolic process IEP Enrichment
BP GO:0006741 NADP biosynthetic process IEP Enrichment
CC GO:0008287 protein serine/threonine phosphatase complex IEP Enrichment
BP GO:0009452 7-methylguanosine RNA capping IEP Enrichment
MF GO:0009916 alternative oxidase activity IEP Enrichment
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Enrichment
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Enrichment
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP Enrichment
BP GO:0019362 pyridine nucleotide metabolic process IEP Enrichment
BP GO:0019363 pyridine nucleotide biosynthetic process IEP Enrichment
MF GO:0019888 protein phosphatase regulator activity IEP Enrichment
CC GO:0030289 protein phosphatase 4 complex IEP Enrichment
MF GO:0031491 nucleosome binding IEP Enrichment
BP GO:0036260 RNA capping IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
BP GO:0043044 ATP-dependent chromatin remodeling IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0046496 nicotinamide nucleotide metabolic process IEP Enrichment
BP GO:0072524 pyridine-containing compound metabolic process IEP Enrichment
BP GO:0072525 pyridine-containing compound biosynthetic process IEP Enrichment
CC GO:1903293 phosphatase complex IEP Enrichment
InterPro domains Description Start Stop
IPR004015 SKI-int_prot_SKIP_SNW-dom 171 329
No external refs found!