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  5. Vocar.0001s0546.1

Vocar.0001s0546.1 (32884270)


Aliases : 32884270

Description : Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan].


Gene families : OG_01_0002951 (OrthoFinder) Phylogenetic Tree(s): OG0002951_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0001s0546.1
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000615.59 tig00000615_g2588.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder
Cre01.g047750 30789695, RPL18a Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder
EOD38969 No alias Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.05 OrthoFinder
OT_07G00180.1 No alias Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.11 OrthoFinder
PTI_09G04120.1 No alias Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.11 OrthoFinder
Sro569_g168300.1 Contig1581.g14356 60S ribosomal protein L18a 0.13 OrthoFinder
TP04G04550.1 No alias Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.11 OrthoFinder
UNPLg00655.t1 No alias Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.09 OrthoFinder
XM_002501183.1 MICPUN_57540, 57540 Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.06 OrthoFinder
XM_003062266.1 MicpuC2_49713, 49713 Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01009296.1_cds_GFH33674.1_28151 HaLaN_33080, GFH33674 60S ribosomal protein L18a-2 0.03 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57226.1_9365 PRW57226 60S ribosomal L18a-2 0.05 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495548.1_1546 KAA8495548 60S ribosomal protein L18a 0.1 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004197 cysteine-type endopeptidase activity IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
MF GO:0042802 identical protein binding IEP Enrichment
MF GO:0042803 protein homodimerization activity IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
BP GO:0051604 protein maturation IEP Enrichment
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
BP GO:0071586 CAAX-box protein processing IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR023573 Ribosomal_L18a//L18Ae/LX 10 131
No external refs found!