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  5. Vocar.0001s0375.1

Vocar.0001s0375.1 (32884383)


Aliases : 32884383

Description : WD40 repeat; Anaphase-promoting complex subunit 4, WD40 domain [Interproscan].


Gene families : OG_01_0000992 (OrthoFinder) Phylogenetic Tree(s): OG0000992_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0001s0375.1
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
Cre01.g039500 30789378, FAP89 Notchless protein homolog OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre04.g222000 30791437 Notchless protein homolog OS=Arabidopsis thaliana 0.07 OrthoFinder
Cre10.g465650 30790623 Dynein assembly factor with WDR repeat domains 1... 0.03 OrthoFinder
Cre12.g512750 30792393, TEF20 Dynein assembly factor with WDR repeat domains 1... 0.18 OrthoFinder
Cre17.g723450 30782721 Probable cytosolic iron-sulfur protein assembly protein... 0.04 OrthoFinder
Dusal.0693s00003.1 33196183 Tetratricopeptide repeat [Interproscan]. 0.02 OrthoFinder
Vocar.0009s0252.1 32893218 WD40 repeat [Interproscan]. 0.02 OrthoFinder
Vocar.0009s0254.1 32893207 WD40 repeat [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01002419.1_cds_GFH24015.1_18492 HaLaN_21727, GFH24015 Hypothetical protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0004725 protein tyrosine phosphatase activity IEP Enrichment
MF GO:0005261 cation channel activity IEP Enrichment
MF GO:0005262 calcium channel activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006470 protein dephosphorylation IEP Enrichment
BP GO:0006816 calcium ion transport IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0015085 calcium ion transmembrane transporter activity IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
MF GO:0046873 metal ion transmembrane transporter activity IEP Enrichment
BP GO:0070588 calcium ion transmembrane transport IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 1711 1748
IPR001680 WD40_repeat 1159 1193
IPR001680 WD40_repeat 1197 1235
IPR001680 WD40_repeat 1500 1538
IPR001680 WD40_repeat 1466 1496
IPR001680 WD40_repeat 1543 1580
IPR001680 WD40_repeat 1627 1664
IPR001680 WD40_repeat 1584 1622
IPR001680 WD40_repeat 1420 1445
IPR001680 WD40_repeat 1668 1706
IPR024977 Apc4_WD40_dom 1249 1289
IPR024977 Apc4_WD40_dom 1300 1386
No external refs found!