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  5. Vocar.0001s0304.1

Vocar.0001s0304.1 (32885658)


Aliases : 32885658

Description : Ribosomal protein L27 [Interproscan].


Gene families : OG_01_0000894 (OrthoFinder) Phylogenetic Tree(s): OG0000894_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0001s0304.1
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00022075.47 tig00022075_g23608.t1 50S ribosomal protein L27, chloroplastic OS=Spinacia oleracea 0.05 OrthoFinder
Cre06.g300800 30778964, PRPL27 50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana 0.12 OrthoFinder
Cz08g09200.t1 No alias Ribosomal protein L27 [Interproscan]. 0.05 OrthoFinder
OT_07G01560.1 No alias Ribosomal protein L27 [Interproscan]. 0.05 OrthoFinder
Sro1328_g263130.1 Contig1099.g10653 Protein L27 0.02 OrthoFinder
Sro51_chlor_g029890.1 Rpl27 Rpl27 0.03 OrthoFinder
SymbC1.scaffold2.877 2.877 GTP1/OBG domain; Ribosomal protein L27; Type III... 0.02 OrthoFinder
TPCG01990.1 No alias Ribosomal protein L27 [Interproscan]. 0.03 OrthoFinder
TPCG03010.1 No alias Ribosomal protein L27 [Interproscan]. 0.03 OrthoFinder
Transcript_contig_89636 89636 Ribosomal protein L27 [Interproscan]. 0.01 OrthoFinder
XM_002499554.1 MICPUN_56110, 56110 Ribosomal protein L27 (RPL27) 0.02 OrthoFinder
lcl|BLLF01003179.1_cds_GFH26609.1_21086 HaLaN_24785, GFH26609 50S ribosomal protein L27 0.03 OrthoFinder
lcl|LHPG02000019.1_cds_PRW32583.1_3993 PRW32583 50S ribosomal L27 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004017 adenylate kinase activity IEP Enrichment
MF GO:0004418 hydroxymethylbilane synthase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005506 iron ion binding IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
MF GO:0008171 O-methyltransferase activity IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Enrichment
MF GO:0015035 protein-disulfide reductase activity IEP Enrichment
MF GO:0015036 disulfide oxidoreductase activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Enrichment
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0019205 nucleobase-containing compound kinase activity IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Enrichment
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
MF GO:0050145 nucleoside monophosphate kinase activity IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
MF GO:0098809 nitrite reductase activity IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
InterPro domains Description Start Stop
IPR001684 Ribosomal_L27 30 123
No external refs found!