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  5. TPCG03010.1

TPCG03010.1


Description : Ribosomal protein L27 [Interproscan].


Gene families : OG_01_0000894 (OrthoFinder) Phylogenetic Tree(s): OG0000894_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TPCG03010.1
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
Cre06.g300800 30778964, PRPL27 50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana 0.04 OrthoFinder
Cz08g09200.t1 No alias Ribosomal protein L27 [Interproscan]. 0.04 OrthoFinder
Dusal.1029s00008.1 33196318 Ribosomal protein L27 [Interproscan]. 0.01 OrthoFinder
OT_07G01560.1 No alias Ribosomal protein L27 [Interproscan]. 0.04 OrthoFinder
Sro51_chlor_g029890.1 Rpl27 Rpl27 0.07 OrthoFinder
SymbC1.scaffold9.69 9.69 EF-hand domain [Interproscan]. 0.01 OrthoFinder
Vocar.0001s0304.1 32885658 Ribosomal protein L27 [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01003179.1_cds_GFH26609.1_21086 HaLaN_24785, GFH26609 50S ribosomal protein L27 0.02 OrthoFinder
lcl|LHPG02000019.1_cds_PRW32583.1_3993 PRW32583 50S ribosomal L27 0.03 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8490960.1_6163 KAA8490960 50S ribosomal protein L27 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001684 Ribosomal_L27 2 80
No external refs found!