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  5. Cpa|evm.model.tig00000241.38

Cpa|evm.model.tig00000241.38 (tig00000241_g20896.t1)


Aliases : tig00000241_g20896.t1

Description : Cell cycle.interphase.DNA replication.preinitiation.MCM replicative DNA helicase complex.MCM7 component


Gene families : OG_01_0000321 (OrthoFinder) Phylogenetic Tree(s): OG0000321_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000241.38
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
Cre03.g178650 30786765, MCM6 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.11 OrthoFinder
Cre10.g455850 30790894, MCM7 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.12 OrthoFinder
Cre12.g540927 30791701 Probable DNA helicase MCM9 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz01g28090.t1 No alias MCM, AAA-lid domain; MCM OB domain; MCM domain; Mcm6,... 0.03 OrthoFinder
Cz10g20280.t1 No alias MCM N-terminal domain; MCM, AAA-lid domain; MCM OB... 0.04 OrthoFinder
EOD16317 No alias MCM OB domain; MCM, AAA-lid domain; MCM N-terminal... 0.04 OrthoFinder
EOD19125 No alias MCM OB domain; MCM, AAA-lid domain; MCM N-terminal... 0.04 OrthoFinder
EOD29724 No alias MCM OB domain; MCM, AAA-lid domain; MCM N-terminal... 0.04 OrthoFinder
OT_01G02550.1 No alias MCM, AAA-lid domain; MCM OB domain; Mcm6, C-terminal... 0.09 OrthoFinder
OT_02G01820.1 No alias MCM, AAA-lid domain; MCM domain; MCM N-terminal domain;... 0.03 OrthoFinder
OT_05G01710.1 No alias MCM, AAA-lid domain; MCM domain; MCM OB domain [Interproscan]. 0.08 OrthoFinder
PTI_06G04900.1 No alias MCM domain; MCM, AAA-lid domain; MCM OB domain [Interproscan]. 0.03 OrthoFinder
PTI_11G01130.1 No alias MCM domain; MCM, AAA-lid domain; MCM OB domain [Interproscan]. 0.02 OrthoFinder
Sro1053_g235850.1 Contig4118.g31456 Zygotic DNA replication licensing factor mcm3 0.03 OrthoFinder
Sro323_g117340.1 Contig364.g4915 Maternal DNA replication licensing factor mcm6 0.02 OrthoFinder
TP05G04710.1 No alias MCM, AAA-lid domain; MCM OB domain; MCM domain [Interproscan]. 0.03 OrthoFinder
Transcript_contig_56242 56242 MCM domain; MCM N-terminal domain; MCM OB domain [Interproscan]. 0.05 OrthoFinder
Transcript_contig_67540 67540 MCM, AAA-lid domain; MCM domain; MCM N-terminal domain;... 0.06 OrthoFinder
Vocar.0015s0342.1 32899062 MCM OB domain; MCM N-terminal domain; Mcm6, C-terminal... 0.02 OrthoFinder
Vocar.0028s0155.1 32895592 MCM, AAA-lid domain; MCM N-terminal domain; MCM OB... 0.02 OrthoFinder
lcl|BLLF01001170.1_cds_GFH17581.1_12058 HaLaN_14243, GFH17581 DNA replication licensing factor MCM7 0.03 OrthoFinder
lcl|BLLF01001600.1_cds_GFH20235.1_14712 HaLaN_17325, GFH20235 DNA helicase 0.02 OrthoFinder
lcl|BLLF01002739.1_cds_GFH25166.1_19643 HaLaN_23090, GFH25166 DNA helicase 0.04 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57124.1_9129 PRW57124 DNA replication licensing factor MCM7 0.06 OrthoFinder
lcl|LHPG02000018.1_cds_PRW33036.1_3726 PRW33036 DNA replication licensing factor Mcm6 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499259.1_8212 KAA8499259 DNA replication licensing factor mcm6 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0000152 nuclear ubiquitin ligase complex IEP Enrichment
CC GO:0000502 proteasome complex IEP Enrichment
CC GO:0000776 kinetochore IEP Enrichment
MF GO:0003689 DNA clamp loader activity IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005663 DNA replication factor C complex IEP Enrichment
CC GO:0005680 anaphase-promoting complex IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0007346 regulation of mitotic cell cycle IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010564 regulation of cell cycle process IEP Enrichment
BP GO:0010639 negative regulation of organelle organization IEP Enrichment
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
BP GO:0032780 negative regulation of ATPase activity IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0033044 regulation of chromosome organization IEP Enrichment
BP GO:0033045 regulation of sister chromatid segregation IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
CC GO:0042555 MCM complex IEP Enrichment
BP GO:0043086 negative regulation of catalytic activity IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043462 regulation of ATPase activity IEP Enrichment
BP GO:0044092 negative regulation of molecular function IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051095 regulation of helicase activity IEP Enrichment
BP GO:0051097 negative regulation of helicase activity IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051129 negative regulation of cellular component organization IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0051726 regulation of cell cycle IEP Enrichment
BP GO:0051983 regulation of chromosome segregation IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
BP GO:1901987 regulation of cell cycle phase transition IEP Enrichment
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Enrichment
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
BP GO:1905462 regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905463 negative regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905774 regulation of DNA helicase activity IEP Enrichment
BP GO:1905775 negative regulation of DNA helicase activity IEP Enrichment
BP GO:1905818 regulation of chromosome separation IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001251 negative regulation of chromosome organization IEP Enrichment
InterPro domains Description Start Stop
IPR001208 MCM_dom 323 544
IPR027925 MCM_N 17 144
IPR041562 MCM_lid 562 646
IPR033762 MCM_OB 153 283
No external refs found!