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  5. TP20G01330.1

TP20G01330.1


Description : Zinc finger, CCCH-type; RNA recognition motif domain [Interproscan].


Gene families : OG_01_0003723 (OrthoFinder) Phylogenetic Tree(s): OG0003723_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP20G01330.1
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
OT_16G01240.1 No alias RNA recognition motif domain; Zinc finger, CCCH-type... 0.02 OrthoFinder
XM_002506526.1 MICPUN_71437, 71437 RNA recognition motif domain; Zinc finger, CCCH-type... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016567 protein ubiquitination IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Enrichment
CC GO:0031300 intrinsic component of organelle membrane IEP Enrichment
CC GO:0031301 integral component of organelle membrane IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 15 38
IPR000571 Znf_CCCH 156 178
IPR000504 RRM_dom 90 145
No external refs found!