Cpa|evm.model.tig00000241.28 (tig00000241_g20886.t1)


Aliases : tig00000241_g20886.t1

Description : U2 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana


Gene families : OG_01_0004993 (OrthoFinder) Phylogenetic Tree(s): OG0004993_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000241.28
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Cre16.g679600 30777798 RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder
EOD08277 No alias Leucine-rich repeat [Interproscan]. 0.01 OrthoFinder
PTI_07G03370.1 No alias Leucine-rich repeat [Interproscan]. 0.02 OrthoFinder
TP13G02380.1 No alias Leucine-rich repeat [Interproscan]. 0.02 OrthoFinder
XM_002505885.1 MICPUN_88148, 88148 Leucine-rich repeat [Interproscan]. 0.01 OrthoFinder
XM_003057174.1 MicpuC2_11284, 11284 Leucine-rich repeat [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Enrichment
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006621 protein retention in ER lumen IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0032507 maintenance of protein location in cell IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
BP GO:0045185 maintenance of protein location IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0051235 maintenance of location IEP Enrichment
BP GO:0051651 maintenance of location in cell IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072595 maintenance of protein localization in organelle IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment

No InterPro domains available for this sequence

No external refs found!