Description : Domain of unknown function DUF1605; Helicase-associated domain; Helicase, C-terminal; DEAD/DEAH box helicase domain [Interproscan].
Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: TP13G03460.1 | |
Cluster | HCCA: Cluster_21 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00000113.111 | tig00000113_g5693.t1 | ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana | 0.05 | OrthoFinder | |
Cpa|evm.model.tig00000796.23 | tig00000796_g4246.t1 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | OrthoFinder | |
Cpa|evm.model.tig00000842.2 | tig00000842_g4821.t2 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.01 | OrthoFinder | |
Cpa|evm.model.tig00022075.25 | tig00022075_g23589.t1 | RNA processing.RNA splicing.spliceosome... | 0.03 | OrthoFinder | |
Cre07.g329150 | 30774611 | Pre-mRNA-splicing factor ATP-dependent RNA helicase... | 0.02 | OrthoFinder | |
Cre07.g352251 | 30775310 | ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana | 0.03 | OrthoFinder | |
Cz01g23210.t1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.04 | OrthoFinder | |
Cz04g05220.t1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.03 | OrthoFinder | |
Cz05g31260.t1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.06 | OrthoFinder | |
Dusal.0084s00034.1 | 33201464 | Helicase, C-terminal; Helicase-associated domain;... | 0.01 | OrthoFinder | |
EOD22735 | No alias | Helicase-associated domain; DEAD/DEAH box helicase... | 0.03 | OrthoFinder | |
OT_05G03840.1 | No alias | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.03 | OrthoFinder | |
OT_11G02430.1 | No alias | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.02 | OrthoFinder | |
PTI_05G02970.1 | No alias | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.13 | OrthoFinder | |
Sro4_g003320.1 | Contig3815.g29250 | Splicing factor ATP-dependent RNA helicase | 0.08 | OrthoFinder | |
Sro834_g208730.1 | Contig2061.g17675 | Splicing factor ATP-dependent RNA helicase | 0.15 | OrthoFinder | |
Transcript_contig_55987 | 55987 | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.03 | OrthoFinder | |
Vocar.0005s0082.1 | 32884001 | Domain of unknown function DUF1605; Helicase,... | 0.02 | OrthoFinder | |
Vocar.0017s0041.1 | 32891358 | Domain of unknown function DUF1605; Helicase,... | 0.04 | OrthoFinder | |
XM_002502185.1 | MICPUN_81845, 81845 | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.08 | OrthoFinder | |
XM_003059475.1 | MicpuC2_18184, 18184 | AAA+ ATPase domain; Helicase, C-terminal;... | 0.02 | OrthoFinder | |
lcl|LHPG02000002.1_cds_PRW60688.1_4603 | PRW60688 | Putative pre-mRNA-splicing factor ATP-dependent RNA helicase | 0.08 | OrthoFinder | |
lcl|LHPG02000016.1_cds_PRW33665.1_3289 | PRW33665 | Putative ATP-dependent RNA helicase DHX35 | 0.02 | OrthoFinder | |
lcl|LHPG02000018.1_cds_PRW32898.1_3654 | PRW32898 | ATP-dependent RNA helicase isoform X1 | 0.05 | OrthoFinder | |
lcl|VRMN01000002.1_cds_KAA8496833.1_562 | KAA8496833 | Putative pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | OrthoFinder | |
lcl|VRMN01000010.1_cds_KAA8492270.1_5453 | KAA8492270 | Putative pre-mRNA-splicing factor ATP-dependent RNA... | 0.04 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0004386 | helicase activity | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000154 | rRNA modification | IEP | Enrichment |
BP | GO:0000469 | cleavage involved in rRNA processing | IEP | Enrichment |
BP | GO:0001510 | RNA methylation | IEP | Enrichment |
MF | GO:0003723 | RNA binding | IEP | Enrichment |
MF | GO:0003725 | double-stranded RNA binding | IEP | Enrichment |
MF | GO:0003918 | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | IEP | Enrichment |
MF | GO:0005515 | protein binding | IEP | Enrichment |
MF | GO:0005525 | GTP binding | IEP | Enrichment |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
BP | GO:0006364 | rRNA processing | IEP | Enrichment |
BP | GO:0006396 | RNA processing | IEP | Enrichment |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
MF | GO:0008649 | rRNA methyltransferase activity | IEP | Enrichment |
BP | GO:0009116 | nucleoside metabolic process | IEP | Enrichment |
BP | GO:0009262 | deoxyribonucleotide metabolic process | IEP | Enrichment |
BP | GO:0009263 | deoxyribonucleotide biosynthetic process | IEP | Enrichment |
BP | GO:0009451 | RNA modification | IEP | Enrichment |
BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
BP | GO:0016072 | rRNA metabolic process | IEP | Enrichment |
MF | GO:0016435 | rRNA (guanine) methyltransferase activity | IEP | Enrichment |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Enrichment |
CC | GO:0030684 | preribosome | IEP | Enrichment |
CC | GO:0030688 | preribosome, small subunit precursor | IEP | Enrichment |
BP | GO:0031167 | rRNA methylation | IEP | Enrichment |
CC | GO:0032040 | small-subunit processome | IEP | Enrichment |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Enrichment |
BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
BP | GO:0036265 | RNA (guanine-N7)-methylation | IEP | Enrichment |
BP | GO:0043414 | macromolecule methylation | IEP | Enrichment |
BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
BP | GO:0070475 | rRNA base methylation | IEP | Enrichment |
BP | GO:0070476 | rRNA (guanine-N7)-methylation | IEP | Enrichment |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
BP | GO:0090305 | nucleic acid phosphodiester bond hydrolysis | IEP | Enrichment |
BP | GO:0090501 | RNA phosphodiester bond hydrolysis | IEP | Enrichment |
MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | Enrichment |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
BP | GO:1901657 | glycosyl compound metabolic process | IEP | Enrichment |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Enrichment |
No external refs found! |