1. Home
  2. Species
  3. Thalassiosira pseudonana
  4. Sequence
  5. TP13G01390.1

TP13G01390.1


Description : Ribosomal protein S8e/ribosomal biogenesis NSA2 [Interproscan].


Gene families : OG_01_0002728 (OrthoFinder) Phylogenetic Tree(s): OG0002728_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP13G01390.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020610.79 tig00020610_g12025.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.29 OrthoFinder
Cre06.g272800 30780026, RPS8 Protein biosynthesis.cytosolic ribosome.small subunit... 0.44 OrthoFinder
Cz09g32130.t1 No alias Ribosomal protein S8e/ribosomal biogenesis NSA2 [Interproscan]. 0.24 OrthoFinder
Dusal.0017s00011.1 33200516 Ribosomal protein S8e/ribosomal biogenesis NSA2 [Interproscan]. 0.18 OrthoFinder
EOD23240 No alias Ribosomal protein S8e/ribosomal biogenesis NSA2 [Interproscan]. 0.17 OrthoFinder
EOD29180 No alias Ribosomal protein S8e/ribosomal biogenesis NSA2 [Interproscan]. 0.26 OrthoFinder
OT_14G02570.1 No alias Ribosomal protein S8e/ribosomal biogenesis NSA2 [Interproscan]. 0.13 OrthoFinder
PTI_01G03760.1 No alias Ribosomal protein S8e/ribosomal biogenesis NSA2 [Interproscan]. 0.41 OrthoFinder
Sro1192_g251020.1 Contig331.g4398 40S ribosomal protein S8 0.48 OrthoFinder
SymbC1.scaffold11142.1 11142.1 Ribosomal protein S8e/ribosomal biogenesis NSA2 [Interproscan]. 0.08 OrthoFinder
Vocar.0002s0334.1 32890975 Ribosomal protein S8e/ribosomal biogenesis NSA2 [Interproscan]. 0.08 OrthoFinder
XM_002505379.1 MICPUN_95694, 95694 Ribosomal protein S8e/ribosomal biogenesis NSA2 [Interproscan]. 0.28 OrthoFinder
XM_003059653.1 MicpuC2_34143, 34143 Ribosomal protein S8e/ribosomal biogenesis NSA2 [Interproscan]. 0.14 OrthoFinder
lcl|BLLF01000389.1_cds_GFH11277.1_5754 HaLaN_06752, GFH11277 40S ribosomal protein S8 0.07 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61452.1_199 PRW61452 40S ribosomal S8 0.06 OrthoFinder
lcl|VRMN01000018.1_cds_KAA8490882.1_5654 KAA8490882 40S ribosomal protein S8 0.26 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR022309 Ribosomal_S8e/biogenesis_NSA2 1 186
No external refs found!