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  5. TP10G03540.1

TP10G03540.1


Description : Transcription elongation factor Spt6, YqgF domain; Spt6, SH2 domain; Transcription elongation factor Spt6, helix-hairpin-helix motif [Interproscan].


Gene families : OG_01_0003081 (OrthoFinder) Phylogenetic Tree(s): OG0003081_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP10G03540.1
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001486.8 tig00001486_g8925.t1 Chromatin organisation.histone chaperone... 0.02 OrthoFinder
Cz04g35080.t1 No alias Transcription elongation factor Spt6,... 0.02 OrthoFinder
EOD17971 No alias Spt6, SH2 domain [Interproscan]. 0.02 OrthoFinder
EOD39798 No alias Spt6, SH2 domain [Interproscan]. 0.02 OrthoFinder
OT_13G00390.1 No alias Transcription elongation factor Spt6,... 0.02 OrthoFinder
PTI_15G01540.1 No alias Helix-turn-helix DNA-binding domain of Spt6;... 0.03 OrthoFinder
XM_002501949.1 MICPUN_105535, 105535 Transcription elongation-nucleosome displacement protein 0.04 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45415.1_1243 PRW45415 Transcription elongation factor SPT6 isoform A 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006887 exocytosis IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
CC GO:0030286 dynein complex IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
CC GO:0071203 WASH complex IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR032706 Spt6_HHH 696 797
IPR028231 Spt6_YqgF 549 681
IPR035420 Spt6_SH2 1023 1227
No external refs found!