1. Home
  2. Species
  3. Thalassiosira pseudonana
  4. Sequence
  5. TP07G01950.1

TP07G01950.1


Description : EF-hand domain [Interproscan].


Gene families : OG_01_0000037 (OrthoFinder) Phylogenetic Tree(s): OG0000037_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP07G01950.1
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021435.47 tig00021435_g21427.t1 Calmodulin OS=Mougeotia scalaris 0.01 OrthoFinder
Cre03.g150300 30787530 Calmodulin-3 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder
PTI_27G00410.1 No alias EF-hand domain [Interproscan]. 0.02 OrthoFinder
Sro1012_g231150.1 Contig304.g3985 Calmodulin-5/6/7/8 0.03 OrthoFinder
Sro2020_g311360.1 Contig280.g3625 Myosin light chain 1/3, skeletal muscle isoform 0.02 OrthoFinder
SymbC1.scaffold1032.3 1032.3 EF-hand domain; EF-hand domain pair [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold6405.5 6405.5 EF-hand domain [Interproscan]. 0.01 OrthoFinder
Vocar.0015s0348.1 32899204 EF-hand domain [Interproscan]. 0.01 OrthoFinder
XM_003058919.1 MicpuC2_27001, 27001 EF-hand domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32961.1_3745 PRW32961 Calmodulin 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497936.1_6889 KAA8497936 Calmodulin 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004347 glucose-6-phosphate isomerase activity IEP Enrichment
MF GO:0004721 phosphoprotein phosphatase activity IEP Enrichment
MF GO:0004725 protein tyrosine phosphatase activity IEP Enrichment
MF GO:0004852 uroporphyrinogen-III synthase activity IEP Enrichment
BP GO:0005996 monosaccharide metabolic process IEP Enrichment
BP GO:0006006 glucose metabolic process IEP Enrichment
BP GO:0006094 gluconeogenesis IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006897 endocytosis IEP Enrichment
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010033 response to organic substance IEP Enrichment
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Enrichment
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
BP GO:0019236 response to pheromone IEP Enrichment
BP GO:0019318 hexose metabolic process IEP Enrichment
BP GO:0019319 hexose biosynthetic process IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0042221 response to chemical IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0046364 monosaccharide biosynthetic process IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
BP GO:1901135 carbohydrate derivative metabolic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 13 74
IPR002048 EF_hand_dom 87 149
No external refs found!