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  5. TP05G01140.1

TP05G01140.1


Description : Zinc finger, RING-type; RCHY1, zinc-ribbon [Interproscan].


Gene families : OG_01_0000569 (OrthoFinder) Phylogenetic Tree(s): OG0000569_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP05G01140.1
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_69021 69021 Haemerythrin-like [Interproscan]. 0.02 OrthoFinder
Transcript_contig_89664 89664 Zinc finger, CHY-type; RCHY1, zinc-ribbon; RING-type... 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009166 nucleotide catabolic process IEP Enrichment
BP GO:0016567 protein ubiquitination IEP Enrichment
CC GO:0017119 Golgi transport complex IEP Enrichment
BP GO:0019439 aromatic compound catabolic process IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Enrichment
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
MF GO:0060090 molecular adaptor activity IEP Enrichment
MF GO:0061630 ubiquitin protein ligase activity IEP Enrichment
MF GO:0061659 ubiquitin-like protein ligase activity IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
BP GO:1901292 nucleoside phosphate catabolic process IEP Enrichment
BP GO:1901361 organic cyclic compound catabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR039512 RCHY1_zinc-ribbon 158 215
IPR001841 Znf_RING 109 153
No external refs found!