1. Home
  2. Species
  3. Thalassiosira pseudonana
  4. Sequence
  5. TP04G07800.1

TP04G07800.1


Description : Bestrophin/UPF0187 [Interproscan].


Gene families : OG_01_0000064 (OrthoFinder) Phylogenetic Tree(s): OG0000064_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP04G07800.1
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
EOD30282 No alias Bestrophin/UPF0187 [Interproscan]. 0.03 OrthoFinder
Sro1890_g303730.1 Contig981.g9967 UPF0187 protein 0.02 OrthoFinder
Sro2204_g318970.1 Contig732.g8410 UPF0187 protein 0.02 OrthoFinder
Sro659_g182830.1 Contig2136.g17991 UPF0187 protein 0.02 OrthoFinder
lcl|LHPG02000016.1_cds_PRW33726.1_3376 PRW33726 UPF0187 chloroplastic 0.03 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493711.1_4473 KAA8493711 UPF0187 protein 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004329 formate-tetrahydrofolate ligase activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
InterPro domains Description Start Stop
IPR021134 Bestrophin/UPF0187 81 383
No external refs found!