1. Home
  2. Species
  3. Thalassiosira pseudonana
  4. Sequence
  5. TP04G06710.1

TP04G06710.1


Description : Tetratricopeptide repeat [Interproscan].


Gene families : OG_01_0004168 (OrthoFinder) Phylogenetic Tree(s): OG0004168_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP04G06710.1
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
Cre12.g513500 30791943, XAB2 RNA processing.RNA splicing.spliceosome-associated... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0004334 fumarylacetoacetase activity IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
CC GO:0005685 U1 snRNP IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0006376 mRNA splice site selection IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
CC GO:0016593 Cdc73/Paf1 complex IEP Enrichment
MF GO:0016822 hydrolase activity, acting on acid carbon-carbon bonds IEP Enrichment
MF GO:0016823 hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR019734 TPR_repeat 223 249
IPR019734 TPR_repeat 325 350
No external refs found!