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  5. TP04G06060.1

TP04G06060.1


Description : Proteasome, subunit alpha/beta [Interproscan].


Gene families : OG_01_0001472 (OrthoFinder) Phylogenetic Tree(s): OG0001472_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP04G06060.1
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001098.5 tig00001098_g7056.t1 Protein degradation.26S proteasome.20S core... 0.11 OrthoFinder
Cre06.g279000 30779585 Protein degradation.26S proteasome.20S core... 0.2 OrthoFinder
Cre12.g531100 30791746 Protein degradation.26S proteasome.20S core... 0.24 OrthoFinder
Cz16g07050.t1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.02 OrthoFinder
OT_01G03130.1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.02 OrthoFinder
OT_14G00030.1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.1 OrthoFinder
PTI_04G04470.1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.28 OrthoFinder
Sro209_g087240.1 Contig4070.g31195 Beta type-6-A like protein 0.31 OrthoFinder
SymbC1.scaffold2918.1 2918.1 Proteasome, subunit alpha/beta [Interproscan]. 0.01 OrthoFinder
Transcript_contig_56963 56963 Proteasome, subunit alpha/beta [Interproscan]. 0.02 OrthoFinder
Vocar.0028s0084.1 32895721 Proteasome, subunit alpha/beta [Interproscan]. 0.03 OrthoFinder
XM_002503024.1 MICPUN_59004, 59004 Proteasome, subunit alpha/beta [Interproscan]. 0.08 OrthoFinder
XM_003060786.1 MicpuC2_44601, 44601 Proteasome, subunit alpha/beta [Interproscan]. 0.07 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497752.1_6705 KAA8497752 Proteasome subunit beta type-6 0.09 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
CC GO:0008537 proteasome activator complex IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0097526 spliceosomal tri-snRNP complex IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 1 175
No external refs found!