1. Home
  2. Species
  3. Thalassiosira pseudonana
  4. Sequence
  5. TP02G08090.1

TP02G08090.1


Description : Photosystem II PsbU, oxygen evolving complex [Interproscan].


Gene families : OG_01_0006557 (OrthoFinder) Phylogenetic Tree(s): OG0006557_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP02G08090.1
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000851.31 tig00000851_g4915.t1 Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.02 OrthoFinder
EOD04610 No alias Photosystem II PsbU, oxygen evolving complex [Interproscan]. 0.11 OrthoFinder
EOD07444 No alias Photosystem II PsbU, oxygen evolving complex [Interproscan]. 0.11 OrthoFinder
EOD15138 No alias Photosystem II PsbU, oxygen evolving complex [Interproscan]. 0.11 OrthoFinder
PTI_04G05040.1 No alias Photosystem II PsbU, oxygen evolving complex [Interproscan]. 0.16 OrthoFinder
Sro1226_g254250.1 Contig1389.g12816 12 kDa extrinsic protein, chloroplastic 0.25 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491840.1_4848 KAA8491840 Photosystem II 12 kDa extrinsic protein, chloroplastic 0.04 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0009523 photosystem II IEA Interproscan
CC GO:0009654 photosystem II oxygen evolving complex IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0019898 extrinsic component of membrane IEA Interproscan
BP GO:0042549 photosystem II stabilization IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
MF GO:0008484 sulfuric ester hydrolase activity IEP Enrichment
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
BP GO:0010024 phytochromobilin biosynthetic process IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
MF GO:0010242 oxygen evolving activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Enrichment
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
MF GO:0046422 violaxanthin de-epoxidase activity IEP Enrichment
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Enrichment
MF GO:0050897 cobalt ion binding IEP Enrichment
BP GO:0051202 phytochromobilin metabolic process IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0098809 nitrite reductase activity IEP Enrichment
InterPro domains Description Start Stop
IPR010527 PSII_PsbU 57 147
No external refs found!