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  5. TP02G00750.1

TP02G00750.1


Description : RIO1 family [Interproscan].


Gene families : OG_01_0003136 (OrthoFinder) Phylogenetic Tree(s): OG0003136_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP02G00750.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000980.6 tig00000980_g6131.t1 Protein modification.phosphorylation.atypical kinase... 0.04 OrthoFinder
Cz08g13210.t1 No alias RIO1 family [Interproscan]. 0.05 OrthoFinder
EOD28399 No alias RIO1 family [Interproscan]. 0.02 OrthoFinder
OT_14G00330.1 No alias RIO1 family [Interproscan]. 0.14 OrthoFinder
PTI_27G00620.1 No alias RIO1 family [Interproscan]. 0.17 OrthoFinder
Sro1412_g270480.1 Contig422.g5668 Protein kinase RIO1 0.18 OrthoFinder
XM_002505575.1 MICPUN_67735, 67735 RIO1 family [Interproscan]. 0.08 OrthoFinder
XM_003063692.1 MicpuC2_2206, 2206 RIO1 family [Interproscan]. 0.05 OrthoFinder
lcl|BLLF01000674.1_cds_GFH13992.1_8469 HaLaN_09963, GFH13992 RIO kinase 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58527.1_7750 PRW58527 Serine threonine-kinase RIO1-like 0.1 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003725 double-stranded RNA binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment

No InterPro domains available for this sequence

No external refs found!