Description : RNA polymerase Rpb2, domain 7; RNA polymerase Rpb2, domain 3; RNA polymerase, beta subunit, protrusion; RNA polymerase Rpb2, domain 2; DNA-directed RNA polymerase, subunit 2, hybrid-binding domain; RNA polymerase Rpb2, domain 5; RNA polymerase Rpb2, domain 4 [Interproscan].

Gene families : OG_01_0002526 (OrthoFinder) Phylogenetic Tree(s): OG0002526_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: TP01G04670.1
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
EOD25465 No alias DNA-directed RNA polymerase, subunit 2, hybrid-binding... 0.02 OrthoFinder
Sro308_g113620.1 Contig2352.g19332 Polymerase II subunit RPB2 0.03 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496235.1_2233 KAA8496235 DNA-directed RNA polymerase III subunit RPC2 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
BP GO:0002949 tRNA threonylcarbamoyladenosine modification IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009894 regulation of catabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
BP GO:0031329 regulation of cellular catabolic process IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043487 regulation of RNA stability IEP Enrichment
BP GO:0043488 regulation of mRNA stability IEP Enrichment
BP GO:0044528 regulation of mitochondrial mRNA stability IEP Enrichment
BP GO:0061013 regulation of mRNA catabolic process IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
BP GO:0070525 tRNA threonylcarbamoyladenosine metabolic process IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
BP GO:1903311 regulation of mRNA metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR007647 RNA_pol_Rpb2_5 591 631
IPR007646 RNA_pol_Rpb2_4 506 567
IPR007642 RNA_pol_Rpb2_2 149 329
IPR007120 DNA-dir_RNAP_su2_dom 638 1018
IPR007644 RNA_pol_bsu_protrusion 2 371
IPR007641 RNA_pol_Rpb2_7 1020 1104
IPR007645 RNA_pol_Rpb2_3 405 469
No external refs found!