Sro793_g203310.1 (Contig534.g6939)

Aliases : Contig534.g6939

Description : Sel1 domain protein repeat-containing protein

Gene families : OG_01_0000179 (OrthoFinder) Phylogenetic Tree(s): OG0000179_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sro793_g203310.1
Cluster	HCCA: Cluster_191

Target	Alias	Description	ECC score	Gene Family Method
Sro1227_g254310.1	Contig334.g4443	U-box domain-containing protein	0.04	OrthoFinder
Sro1311_g261780.1	Contig1682.g15105	Sel1 domain protein repeat-containing protein	0.03	OrthoFinder
Sro1438_g272650.1	Contig3435.g26744	Sel1 domain protein repeat-containing protein	0.02	OrthoFinder
Sro1588_g284330.1	Contig4233.g32103	Sel1 domain protein repeat-containing protein	0.05	OrthoFinder
Sro214_g088890.1	Contig282.g3674	Sel1 domain protein repeat-containing protein	0.04	OrthoFinder
Sro227_g092440.1	Contig327.g4356	Sel1 domain protein repeat-containing protein	0.03	OrthoFinder
Sro256_g100570.1	Contig3587.g27702	Hypothetical protein	0.04	OrthoFinder
Sro25_g017160.1	Contig1417.g13055	U box domain [Interproscan].	0.04	OrthoFinder
Sro2646_g333590.1	Contig1915.g16544	Sel1 domain protein repeat-containing protein	0.03	OrthoFinder
Sro2785_g337000.1	Contig449.g6083	U box domain [Interproscan].	0.02	OrthoFinder
Sro341_g121570.1	Contig3952.g30289	Sel1 domain protein repeat-containing protein	0.02	OrthoFinder
Sro361_g126480.1	Contig1094.g10573	SAM and U-box domain-containing protein 1	0.03	OrthoFinder
Sro3_g002900.1	Contig3832.g29475	Sel1 domain protein repeat-containing protein	0.03	OrthoFinder
Sro65_g036920.1	Contig155.g1762	Hypothetical protein	0.03	OrthoFinder
Sro792_g203190.1	Contig385.g5187	Sel1 domain protein repeat-containing protein	0.03	OrthoFinder
Sro793_g203260.1	Contig534.g6934	Sel1 domain protein repeat-containing protein	0.05	OrthoFinder
Sro820_g207210.1	Contig34.g203	Sel1 domain protein repeat-containing protein	0.05	OrthoFinder
Sro870_g213590.1	Contig1807.g15929	Sel1 domain protein repeat-containing protein	0.03	OrthoFinder
Sro897_g217530.1	Contig4351.g32806	U box domain [Interproscan].	0.04	OrthoFinder
Sro963_g225330.1	Contig3377.g26434	ERAD-associated E3 ubiquitin-protein ligase component	0.04	OrthoFinder
Sro983_g227810.1	Contig79.g820	Sel1 domain protein repeat-containing protein	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Enrichment
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Enrichment
BP	GO:0009889	regulation of biosynthetic process	IEP	Enrichment
BP	GO:0010468	regulation of gene expression	IEP	Enrichment
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Enrichment
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Enrichment
BP	GO:0019222	regulation of metabolic process	IEP	Enrichment
BP	GO:0031323	regulation of cellular metabolic process	IEP	Enrichment
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Enrichment
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0051252	regulation of RNA metabolic process	IEP	Enrichment
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Enrichment
BP	GO:0080090	regulation of primary metabolic process	IEP	Enrichment
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Enrichment
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Enrichment
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	147	197
IPR006597	Sel1-like	324	353
IPR006597	Sel1-like	270	281
IPR006597	Sel1-like	289	322

External Links

No external refs found!

Sro793_g203310.1 (Contig534.g6939)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation