Sro788_g202490.1 (Contig3902.g29930)

Aliases : Contig3902.g29930

Description : Retrotransposon protein

Gene families : OG_01_0000925 (OrthoFinder) Phylogenetic Tree(s): OG0000925_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sro788_g202490.1
Cluster	HCCA: Cluster_87

Target	Alias	Description	ECC score	Gene Family Method
Sro1028_g233110.1	Contig2198.g18304	Retrotransposon protein	0.04	OrthoFinder
Sro22_g015530.1	Contig426.g5777	Pol polyprotein	0.05	OrthoFinder
Sro2664_g334090.1	Contig38.g226	Hypothetical protein	0.03	OrthoFinder
Sro3227_g345610.1	Contig1050.g10345	Inherit from COG: Retrotransposon protein	0.04	OrthoFinder
Sro52_g031190.1	Contig3190.g25202	Inherit from COG: Retrotransposon protein	0.05	OrthoFinder
Sro614_g175810.1	Contig1589.g14435	Retrotransposon protein	0.03	OrthoFinder
Sro704_g190240.1	Contig1755.g15585	Hypothetical protein	0.04	OrthoFinder
Sro704_g190250.1	Contig1755.g15586	Retrotransposon protein	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEP	Enrichment
MF	GO:0003678	DNA helicase activity	IEP	Enrichment
MF	GO:0004386	helicase activity	IEP	Enrichment
BP	GO:0006996	organelle organization	IEP	Enrichment
MF	GO:0008094	ATPase, acting on DNA	IEP	Enrichment
BP	GO:0032200	telomere organization	IEP	Enrichment
BP	GO:0042592	homeostatic process	IEP	Enrichment
MF	GO:0046983	protein dimerization activity	IEP	Enrichment
BP	GO:0051276	chromosome organization	IEP	Enrichment
BP	GO:0060249	anatomical structure homeostasis	IEP	Enrichment
BP	GO:0065008	regulation of biological quality	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	113	207
IPR041588	Integrase_H2C2	22	77

External Links

No external refs found!