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  5. Sro760_g198430.1

Sro760_g198430.1 (Contig3371.g26404)


Aliases : Contig3371.g26404

Description : FACT complex subunit SPT16


Gene families : OG_01_0003497 (OrthoFinder) Phylogenetic Tree(s): OG0003497_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro760_g198430.1
Cluster HCCA: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
Cre12.g540076 30793437 Chromatin organisation.histone chaperone activities.FACT... 0.03 OrthoFinder
Cz07g09190.t1 No alias Peptidase M24; Domain of unknown function DUF1747; FACT... 0.01 OrthoFinder
Dusal.0167s00006.1 33188855 FACT complex subunit Spt16, N-terminal lobe domain;... 0.02 OrthoFinder
PTI_02G04200.1 No alias Peptidase M24; FACT complex subunit Spt16 domain; FACT... 0.02 OrthoFinder
Transcript_contig_61237 61237 FACT complex subunit Spt16, N-terminal lobe domain;... 0.03 OrthoFinder
Vocar.0007s0004.1 32887940 FACT complex subunit Spt16, N-terminal lobe domain;... 0.02 OrthoFinder
lcl|BLLF01001730.1_cds_GFH20939.1_15416 HaLaN_18147, GFH20939 Peptidase M24; FACT complex subunit Spt16 domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59881.1_6104 PRW59881 FACT complex subunit SPT16-like 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Enrichment
MF GO:0004620 phospholipase activity IEP Enrichment
MF GO:0004629 phospholipase C activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Enrichment
MF GO:0015020 glucuronosyltransferase activity IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
BP GO:0016197 endosomal transport IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0016298 lipase activity IEP Enrichment
BP GO:0016482 cytosolic transport IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
CC GO:0030906 retromer, cargo-selective complex IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
BP GO:0042147 retrograde transport, endosome to Golgi IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
CC GO:0071203 WASH complex IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR013953 FACT_Spt16 580 738
IPR000994 Pept_M24 199 406
IPR029148 FACT-Spt16_Nlobe 4 182
IPR013719 DUF1747 868 947
No external refs found!