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  5. Sro5_g004430.1

Sro5_g004430.1 (Contig4001.g30758)


Aliases : Contig4001.g30758

Description : II stability/assembly factor HCF136, chloroplastic


Gene families : OG_01_0003736 (OrthoFinder) Phylogenetic Tree(s): OG0003736_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro5_g004430.1
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Cre06.g273700 30778394 Photosynthesis.photophosphorylation.photosystem... 0.07 OrthoFinder
Cz10g21040.t1 No alias Photosynthesis system II assembly factor... 0.04 OrthoFinder
EOD42170 No alias Photosynthesis system II assembly factor... 0.02 OrthoFinder
PTI_13G02840.1 No alias Photosynthesis system II assembly factor... 0.05 OrthoFinder
TP22G01760.1 No alias Photosynthesis system II assembly factor... 0.04 OrthoFinder
Transcript_contig_55682 55682 Photosynthesis system II assembly factor... 0.01 OrthoFinder
Vocar.0002s0344.1 32890876 Photosynthesis system II assembly factor... 0.03 OrthoFinder
XM_002502020.1 MICPUN_58459, 58459 Photosynthesis system II assembly factor... 0.07 OrthoFinder
XM_003057421.1 MicpuC2_32576, 32576 Photosynthesis system II assembly factor... 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61576.1_616 PRW61576 Photosystem II stability assembly factor chloroplastic 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496427.1_156 KAA8496427 Photosystem II stability/assembly factor 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
BP GO:0006979 response to oxidative stress IEP Enrichment
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR028203 PSII_CF48-like_dom 69 398
No external refs found!