1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro556_g166020.1

Sro556_g166020.1 (Contig1584.g14393)


Aliases : Contig1584.g14393

Description : Probable periplasmic serine endoprotease DegP-like


Gene families : OG_01_0000099 (OrthoFinder) Phylogenetic Tree(s): OG0000099_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro556_g166020.1
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020902.80 tig00020902_g15035.t1 No description available 0.02 OrthoFinder
Cre01.g028350 30789587, DEG8 Protein degradation.peptidase families.serine-type... 0.03 OrthoFinder
Cre02.g088400 30785518, DEG1 Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder
Cre12.g498500 30793568, DEG11 Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder
Cz02g25040.t1 No alias Trypsin-like peptidase domain; PDZ domain [Interproscan]. 0.02 OrthoFinder
Dusal.0010s00005.1 33196819 Trypsin-like peptidase domain [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold20.4 20.4 Hypothetical protein 0.01 OrthoFinder
Transcript_contig_53695 53695 Trypsin-like peptidase domain [Interproscan]. 0.03 OrthoFinder
Transcript_contig_55915 55915 PDZ domain; Trypsin-like peptidase domain [Interproscan]. 0.05 OrthoFinder
Vocar.0001s0901.1 32884820 Trypsin-like peptidase domain; PDZ domain [Interproscan]. 0.05 OrthoFinder
Vocar.0022s0023.1 32891802 Trypsin-like peptidase domain; PDZ domain [Interproscan]. 0.01 OrthoFinder
Vocar.0026s0089.1 32892433 Trypsin-like peptidase domain; PDZ domain [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004181 metallocarboxypeptidase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
CC GO:0005886 plasma membrane IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008235 metalloexopeptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016851 magnesium chelatase activity IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Enrichment
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Enrichment
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR001478 PDZ 346 440
No external refs found!