Sro530_g161220.1 (Contig4609.g34407)


Aliases : Contig4609.g34407

Description : Factor C small subunit


Gene families : OG_01_0003725 (OrthoFinder) Phylogenetic Tree(s): OG0003725_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro530_g161220.1
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
Cre06.g251800 30778780, RFC4 Cell cycle.interphase.DNA... 0.02 OrthoFinder
Cz16g15180.t1 No alias ATPase, AAA-type, core [Interproscan]. 0.01 OrthoFinder
EOD29044 No alias ATPase, AAA-type, core [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0000152 nuclear ubiquitin ligase complex IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003993 acid phosphatase activity IEP Enrichment
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Enrichment
MF GO:0004576 oligosaccharyl transferase activity IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
CC GO:0005680 anaphase-promoting complex IEP Enrichment
CC GO:0005743 mitochondrial inner membrane IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0007021 tubulin complex assembly IEP Enrichment
BP GO:0007023 post-chaperonin tubulin folding pathway IEP Enrichment
BP GO:0007346 regulation of mitotic cell cycle IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010498 proteasomal protein catabolic process IEP Enrichment
BP GO:0010564 regulation of cell cycle process IEP Enrichment
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016407 acetyltransferase activity IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
BP GO:0016567 protein ubiquitination IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016791 phosphatase activity IEP Enrichment
MF GO:0016832 aldehyde-lyase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
CC GO:0019866 organelle inner membrane IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
BP GO:0031145 anaphase-promoting complex-dependent catabolic process IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0033044 regulation of chromosome organization IEP Enrichment
BP GO:0033045 regulation of sister chromatid segregation IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0048487 beta-tubulin binding IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
BP GO:0051726 regulation of cell cycle IEP Enrichment
BP GO:0051983 regulation of chromosome segregation IEP Enrichment
CC GO:0061617 MICOS complex IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
CC GO:0098798 mitochondrial protein-containing complex IEP Enrichment
CC GO:0098800 inner mitochondrial membrane protein complex IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
BP GO:1901987 regulation of cell cycle phase transition IEP Enrichment
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Enrichment
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Enrichment
BP GO:1905818 regulation of chromosome separation IEP Enrichment
InterPro domains Description Start Stop
IPR013748 Rep_factorC_C 246 320
IPR003959 ATPase_AAA_core 45 197
No external refs found!