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  5. Cpa|evm.model.tig00000227.25

Cpa|evm.model.tig00000227.25 (tig00000227_g19811.t1)


Aliases : tig00000227_g19811.t1

Description : CSC1-like protein ERD4 OS=Arabidopsis thaliana


Gene families : OG_01_0000148 (OrthoFinder) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000227.25
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Cre08.g360600 30773576, ERM4 Solute transport.channels.OSCA calcium-permeable channel 0.02 OrthoFinder
Cre17.g738150 30781934, ERM10 CSC1-like protein At1g32090 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz13g01120.t1 No alias Calcium-dependent channel, 7TM region, putative... 0.02 OrthoFinder
Cz13g01130.t1 No alias Calcium permeable stress-gated cation channel 1,... 0.03 OrthoFinder
PTI_19G01920.1 No alias Calcium-dependent channel, 7TM region, putative... 0.01 OrthoFinder
lcl|BLLF01001340.1_cds_GFH18694.1_13171 HaLaN_15542, GFH18694 Calcium-dependent channel, 7TM region, putative... 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61421.1_80 PRW61421 ERD4-related membrane 0.02 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492623.1_9316 KAA8492623 Protein RSN1 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0004363 glutathione synthase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0016881 acid-amino acid ligase activity IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR003864 RSN1_7TM 451 734
IPR032880 Csc1_N 8 173
No external refs found!