Sro427_g140590.1 (Contig2653.g21430)


Aliases : Contig2653.g21430

Description : Valine--tRNA ligase


Gene families : OG_01_0000866 (OrthoFinder) Phylogenetic Tree(s): OG0000866_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro427_g140590.1
Cluster HCCA: Cluster_221

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000402.37 tig00000402_g214.t1 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder
Cre07.g350500 30774357 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.09 OrthoFinder
Cre12.g537100 30793066 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 OrthoFinder
Cz05g20150.t1 No alias Glutathione S-transferase, C-terminal; Aminoacyl-tRNA... 0.02 OrthoFinder
Cz06g08200.t1 No alias Aminoacyl-tRNA synthetase, class Ia; Valyl-tRNA... 0.02 OrthoFinder
EOD17893 No alias Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase,... 0.03 OrthoFinder
OT_03G02900.1 No alias Aminoacyl-tRNA synthetase, class Ia;... 0.04 OrthoFinder
OT_08G03790.1 No alias Aminoacyl-tRNA synthetase, class Ia;... 0.03 OrthoFinder
Sro408_g136830.1 Contig3193.g25218 Valine--tRNA ligase (Fragment) 0.03 OrthoFinder
TP18G02600.1 No alias Aminoacyl-tRNA synthetase, class Ia;... 0.01 OrthoFinder
TP20G01590.1 No alias Aminoacyl-tRNA synthetase, class Ia;... 0.06 OrthoFinder
Transcript_contig_89410 89410 Aminoacyl-tRNA synthetase, class Ia; Glutathione... 0.01 OrthoFinder
Vocar.0023s0186.1 32883240 Aminoacyl-tRNA synthetase, class Ia; Valyl-tRNA... 0.03 OrthoFinder
XM_002508255.1 MICPUN_84188, 84188 Valyl-tRNA synthetase, tRNA-binding arm; Aminoacyl-tRNA... 0.02 OrthoFinder
XM_003058944.1 MicpuC2_47388, 47388 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase,... 0.01 OrthoFinder
XM_003062580.1 MicpuC2_45875, 45875 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase,... 0.01 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56769.1_9481 PRW56769 Valine-tRNA ligase isoform A 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495921.1_1919 KAA8495921 Valine--tRNA ligase, chloroplastic/mitochondrial 2 0.02 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494573.1_3103 KAA8494573 Valine--tRNA ligase 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0004832 valine-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
BP GO:0006438 valyl-tRNA aminoacylation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Enrichment
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0004140 dephospho-CoA kinase activity IEP Enrichment
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Enrichment
MF GO:0004640 phosphoribosylanthranilate isomerase activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
MF GO:0004814 arginine-tRNA ligase activity IEP Enrichment
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006420 arginyl-tRNA aminoacylation IEP Enrichment
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006568 tryptophan metabolic process IEP Enrichment
BP GO:0006576 cellular biogenic amine metabolic process IEP Enrichment
BP GO:0006586 indolalkylamine metabolic process IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006810 transport IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
BP GO:0008272 sulfate transport IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009308 amine metabolic process IEP Enrichment
MF GO:0015116 sulfate transmembrane transporter activity IEP Enrichment
MF GO:0015291 secondary active transmembrane transporter activity IEP Enrichment
MF GO:0015297 antiporter activity IEP Enrichment
BP GO:0015936 coenzyme A metabolic process IEP Enrichment
BP GO:0015937 coenzyme A biosynthetic process IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
MF GO:0016860 intramolecular oxidoreductase activity IEP Enrichment
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0042430 indole-containing compound metabolic process IEP Enrichment
MF GO:0042802 identical protein binding IEP Enrichment
MF GO:0042803 protein homodimerization activity IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0044106 cellular amine metabolic process IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
MF GO:0052689 carboxylic ester hydrolase activity IEP Enrichment
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0071586 CAAX-box protein processing IEP Enrichment
BP GO:0072348 sulfur compound transport IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR013155 M/V/L/I-tRNA-synth_anticd-bd 738 899
IPR019499 Val-tRNA_synth_tRNA-bd 965 1029
IPR002300 aa-tRNA-synth_Ia 117 681
No external refs found!