Sro3_g002900.1 (Contig3832.g29475)


Aliases : Contig3832.g29475

Description : Sel1 domain protein repeat-containing protein


Gene families : OG_01_0000179 (OrthoFinder) Phylogenetic Tree(s): OG0000179_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro3_g002900.1
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
Sro1011_g230970.1 Contig997.g10070 Sel1 domain protein repeat-containing protein 0.04 OrthoFinder
Sro1011_g231050.1 Contig997.g10078 SAM and U-box domain-containing protein 1 0.07 OrthoFinder
Sro1227_g254310.1 Contig334.g4443 U-box domain-containing protein 0.03 OrthoFinder
Sro214_g088890.1 Contig282.g3674 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder
Sro256_g100570.1 Contig3587.g27702 Hypothetical protein 0.03 OrthoFinder
Sro2646_g333590.1 Contig1915.g16544 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder
Sro2785_g337000.1 Contig449.g6083 U box domain [Interproscan]. 0.04 OrthoFinder
Sro341_g121570.1 Contig3952.g30289 Sel1 domain protein repeat-containing protein 0.07 OrthoFinder
Sro361_g126480.1 Contig1094.g10573 SAM and U-box domain-containing protein 1 0.03 OrthoFinder
Sro4045_g352650.1 Contig2319.g19150 Hypothetical protein 0.03 OrthoFinder
Sro65_g036920.1 Contig155.g1762 Hypothetical protein 0.09 OrthoFinder
Sro793_g203260.1 Contig534.g6934 Sel1 domain protein repeat-containing protein 0.07 OrthoFinder
Sro793_g203310.1 Contig534.g6939 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder
Sro820_g207210.1 Contig34.g203 Sel1 domain protein repeat-containing protein 0.04 OrthoFinder
Sro963_g225240.1 Contig3377.g26425 Sel1 domain protein repeat-containing protein 0.06 OrthoFinder
Sro963_g225290.2 No alias U box domain; Sel1-like repeat [Interproscan]. 0.03 OrthoFinder
Sro963_g225330.1 Contig3377.g26434 ERAD-associated E3 ubiquitin-protein ligase component 0.11 OrthoFinder
Sro983_g227800.1 Contig79.g819 WD repeat, sterile alpha motif and U-box domain containing 1 0.03 OrthoFinder
Sro983_g227810.1 Contig79.g820 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005576 extracellular region IEP Enrichment
MF GO:0008488 gamma-glutamyl carboxylase activity IEP Enrichment
BP GO:0009405 obsolete pathogenesis IEP Enrichment
BP GO:0017187 peptidyl-glutamic acid carboxylation IEP Enrichment
BP GO:0018200 peptidyl-glutamic acid modification IEP Enrichment
BP GO:0018214 protein carboxylation IEP Enrichment
InterPro domains Description Start Stop
IPR003613 Ubox_domain 14 72
IPR006597 Sel1-like 150 180
IPR006597 Sel1-like 109 143
IPR006597 Sel1-like 182 212
No external refs found!