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  5. Sro366_g127550.1

Sro366_g127550.1 (Contig1993.g17064)


Aliases : Contig1993.g17064

Description : Zinc finger, RING-type [Interproscan].


Gene families : OG_01_0000005 (OrthoFinder) Phylogenetic Tree(s): OG0000005_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro366_g127550.1
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
EOD18251 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
EOD25132 No alias Zinc finger, RING-type [Interproscan]. 0.04 OrthoFinder
OT_10G01420.1 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
PTI_01G05830.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
PTI_10G01940.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
PTI_15G03630.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
PTI_22G01940.1 No alias Zinc finger, RING-type [Interproscan]. 0.03 OrthoFinder
TP02G01330.1 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
TP16G00120.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
XM_002507869.1 MICPUN_60694, 60694 Hypothetical protein 0.01 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495598.1_1596 KAA8495598 E3 ubiquitin-protein ligase 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001841 Znf_RING 136 181
No external refs found!