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  5. Sro35_g022410.1

Sro35_g022410.1 (Contig3323.g26118)


Aliases : Contig3323.g26118

Description : Splicing factor ATP-dependent RNA helicase


Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro35_g022410.1
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000842.2 tig00000842_g4821.t2 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder
Cz02g22140.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.01 OrthoFinder
Cz04g05220.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
Dusal.0072s00015.1 33199066 Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
EOD31099 No alias Domain of unknown function DUF1605 [Interproscan]. 0.01 OrthoFinder
EOD31583 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
OT_16G00250.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.01 OrthoFinder
PTI_07G01260.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
PTI_28G00240.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0004197 cysteine-type endopeptidase activity IEP Enrichment
MF GO:0004402 histone acetyltransferase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Enrichment
BP GO:0006473 protein acetylation IEP Enrichment
BP GO:0006475 internal protein amino acid acetylation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0010035 response to inorganic substance IEP Enrichment
BP GO:0010038 response to metal ion IEP Enrichment
MF GO:0016409 palmitoyltransferase activity IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
BP GO:0016573 histone acetylation IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016746 acyltransferase activity IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
MF GO:0016755 aminoacyltransferase activity IEP Enrichment
MF GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
BP GO:0018393 internal peptidyl-lysine acetylation IEP Enrichment
BP GO:0018394 peptidyl-lysine acetylation IEP Enrichment
BP GO:0019748 secondary metabolic process IEP Enrichment
MF GO:0034212 peptide N-acetyltransferase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0042221 response to chemical IEP Enrichment
BP GO:0043543 protein acylation IEP Enrichment
BP GO:0044550 secondary metabolite biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046937 phytochelatin metabolic process IEP Enrichment
BP GO:0046938 phytochelatin biosynthetic process IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Enrichment
BP GO:0071586 CAAX-box protein processing IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 65 211
IPR007502 Helicase-assoc_dom 529 623
IPR001650 Helicase_C 328 465
No external refs found!