Sro328_g118660.1 (Contig3574.g27621)


Aliases : Contig3574.g27621

Description : Nucleoporin GLE2


Gene families : OG_01_0000858 (OrthoFinder) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro328_g118660.1
Cluster HCCA: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
TP07G03400.1 No alias WD40 repeat [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 120 150
IPR001680 WD40_repeat 245 282
IPR001680 WD40_repeat 29 54
IPR001680 WD40_repeat 83 103
No external refs found!