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  5. Sro3227_g345610.1

Sro3227_g345610.1 (Contig1050.g10345)


Aliases : Contig1050.g10345

Description : Inherit from COG: Retrotransposon protein


Gene families : OG_01_0000925 (OrthoFinder) Phylogenetic Tree(s): OG0000925_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro3227_g345610.1
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
Sro22_g015530.1 Contig426.g5777 Pol polyprotein 0.06 OrthoFinder
Sro2664_g334090.1 Contig38.g226 Hypothetical protein 0.05 OrthoFinder
Sro52_g031190.1 Contig3190.g25202 Inherit from COG: Retrotransposon protein 0.04 OrthoFinder
Sro704_g190240.1 Contig1755.g15585 Hypothetical protein 0.08 OrthoFinder
Sro788_g202490.1 Contig3902.g29930 Retrotransposon protein 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR041588 Integrase_H2C2 77 132
No external refs found!